RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 FCER1AP12319 257 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 EN2P19622 333 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 IKQ13123 557 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 BMP2KLQ5H9B9 411 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 KIFC2Q96AC6 838 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 HMX1Q9NP08 348 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 PAK6Q9NQU5 681 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 U3KPZ7 1027 aaPredicted RBP24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 NEDD4P46934 1319 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 TMEM232C9JQI7 657 aa24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 MFSD14CQ5VZR4 134 aa24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 RCSD1Q6JBY9 416 aa24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 DPP9Q86TI2 863 aa24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 REPS2Q8NFH8 660 aa24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.3■■□□□ 1.48
CCDC88C-210ENST00000555995 ADORA2AP29274 412 aa24.29■■□□□ 1.48
CCDC88C-210ENST00000555995 KCTD2Q14681 263 aa24.29■■□□□ 1.48
CCDC88C-210ENST00000555995 DGKHQ86XP1 1220 aa24.29■■□□□ 1.48
CCDC88C-210ENST00000555995 U2AF1L4Q8WU68 220 aaKnown RBP24.29■■□□□ 1.48
CCDC88C-210ENST00000555995 SLC38A10Q9HBR0 1119 aa24.29■■□□□ 1.48
CCDC88C-210ENST00000555995 ZNFX1Q9P2E3 1918 aaKnown RBP24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 SGPL1O95470 568 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 PRKAR2AP13861 404 aaKnown RBP24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 MCCP23508 829 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 TRDNQ13061 729 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 MAP3K21Q5TCX8 1036 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 SNRNP48Q6IEG0 339 aaKnown RBP24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 KIAA1211Q6ZU35 1233 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 TMEM47Q9BQJ4 181 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 IL25Q9H293 177 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 FBXO40Q9UH90 709 aa24.28■■□□□ 1.48
CCDC88C-210ENST00000555995 KDM4AO75164 1064 aa24.27■■□□□ 1.48
CCDC88C-210ENST00000555995 CCDC96Q2M329 555 aa24.27■■□□□ 1.48
CCDC88C-210ENST00000555995 OLFML2BQ68BL8 750 aa24.27■■□□□ 1.48
CCDC88C-210ENST00000555995 CASC1Q6TDU7 716 aa24.27■■□□□ 1.48
CCDC88C-210ENST00000555995 MMP19Q99542 508 aa24.27■■□□□ 1.48
CCDC88C-210ENST00000555995 PLXNA1Q9UIW2 1896 aa24.26■■□□□ 1.47
CCDC88C-210ENST00000555995 ERICH6BQ5W0A0 696 aa24.26■■□□□ 1.47
CCDC88C-210ENST00000555995 UBAC1Q9BSL1 405 aa24.26■■□□□ 1.47
CCDC88C-210ENST00000555995 B4E1Z4 1266 aa24.25■■□□□ 1.47
CCDC88C-210ENST00000555995 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.25■■□□□ 1.47
CCDC88C-210ENST00000555995 SHISA4Q96DD7 197 aa24.25■■□□□ 1.47
CCDC88C-210ENST00000555995 DEFB118Q96PH6 123 aa24.25■■□□□ 1.47
CCDC88C-210ENST00000555995 PNMA2Q9UL42 364 aa24.25■■□□□ 1.47
CCDC88C-210ENST00000555995 CCL14Q16627 93 aa24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 GPATCH4Q5T3I0 446 aaKnown RBP24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 KCTD1Q719H9 257 aa24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 CPXCR1Q8N123 301 aa24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 ANKLE1Q8NAG6 615 aa24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 CHST13Q8NET6 341 aa24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 ZSCAN10Q96SZ4 725 aaPredicted RBP24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 DIS3Q9Y2L1 958 aaKnown RBP24.24■■□□□ 1.47
CCDC88C-210ENST00000555995 MSCO60682 206 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 TFRCP02786 760 aaKnown RBP24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 PTH1RQ03431 593 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 CACNB2Q08289 660 aaPredicted RBP24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 TKFCQ3LXA3 575 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 RALYLQ86SE5 291 aaKnown RBP24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 MAP4K1Q92918 833 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 CRISPLD2Q9H0B8 497 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 KAT14Q9H8E8 782 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 MTMR7Q9Y216 660 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 PDE4DIPQ5VU43 2346 aa24.23■■□□□ 1.47
CCDC88C-210ENST00000555995 TNKSO95271 1327 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 TRIM32Q13049 653 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 BTNL9Q6UXG8 535 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 NPLOC4Q8TAT6 608 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 ANKS1AQ92625 1134 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 ESYT1Q9BSJ8 1104 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 RAVER2Q9HCJ3 691 aaKnown RBP24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 ZSWIM5Q9P217 1185 aa24.22■■□□□ 1.47
CCDC88C-210ENST00000555995 FARP2O94887 1054 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 CYP21A2P08686 494 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 SNHG28P0DPA3 235 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 PDHBP11177 359 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 PNMA1Q8ND90 353 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 DDX11Q96FC9 970 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 ZKSCAN3Q9BRR0 538 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 PRR12Q9ULL5 1215 aa24.21■■□□□ 1.47
CCDC88C-210ENST00000555995 FRMPD3Q5JV73 1810 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 COBLO75128 1261 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 SART3Q15020 963 aaKnown RBP24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 MSL3Q8N5Y2 521 aaKnown RBP24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 NCOA7Q8NI08 942 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 MAML3Q96JK9 1138 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 HTATIP2Q9BUP3 242 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 ACAD9Q9H845 621 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 FLRT1Q9NZU1 646 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 NRBP1Q9UHY1 535 aa24.2■■□□□ 1.46
CCDC88C-210ENST00000555995 TNRC18O15417 2968 aaPredicted RBP24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 ERICH2A1L162 156 aa24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 CDC45O75419 566 aa24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 ZNF543Q08ER8 600 aa24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 SYDE2Q5VT97 1194 aa24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 ENAHQ8N8S7 591 aaPredicted RBP24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 RBM8AQ9Y5S9 174 aaKnown RBP24.19■■□□□ 1.46
CCDC88C-210ENST00000555995 SLC4A3P48751 1232 aa24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 ASPRV1Q53RT3 343 aa24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 IFIT1BQ5T764 474 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 ANKRD35Q8N283 1001 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms