RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 RCSD1Q6JBY9 416 aa13.93□□□□□ -0.18
HDAC4-216ENST00000544989 IQCA1Q86XH1 822 aa13.93□□□□□ -0.18
HDAC4-216ENST00000544989 LRRC47Q8N1G4 583 aaKnown RBP13.93□□□□□ -0.18
HDAC4-216ENST00000544989 DCAF4Q8WV16 495 aa13.93□□□□□ -0.18
HDAC4-216ENST00000544989 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.93□□□□□ -0.182e-7■■■■■ 30.5
HDAC4-216ENST00000544989 CNNM2Q9H8M5 875 aa13.93□□□□□ -0.18
HDAC4-216ENST00000544989 FBXO28Q9NVF7 368 aa13.93□□□□□ -0.18
HDAC4-216ENST00000544989 TFRCP02786 760 aaKnown RBP13.92□□□□□ -0.18
HDAC4-216ENST00000544989 TOP1P11387 765 aaKnown RBP13.92□□□□□ -0.18
HDAC4-216ENST00000544989 ADORA2AP29274 412 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 HAND2P61296 217 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 KCTD2Q14681 263 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 OLFML2BQ68BL8 750 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 ANKLE1Q8NAG6 615 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 DEFB118Q96PH6 123 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 NUP88Q99567 741 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-216ENST00000544989 KRT23Q9C075 422 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 IL17RBQ9NRM6 502 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 FBXO40Q9UH90 709 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 ZNF214Q9UL59 606 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-216ENST00000544989 ISY1Q9ULR0 285 aaKnown RBP13.92□□□□□ -0.18
HDAC4-216ENST00000544989 PLXNB2O15031 1838 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 ZNF236Q9UL36 1845 aa13.92□□□□□ -0.18
HDAC4-216ENST00000544989 TMEM232C9JQI7 657 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 MSCO60682 206 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 NEFLP07196 543 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 CHMLP26374 656 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 IKQ13123 557 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-216ENST00000544989 REPS2Q8NFH8 660 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 KIFC2Q96AC6 838 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 SHISA4Q96DD7 197 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 MMP19Q99542 508 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 HTATIP2Q9BUP3 242 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 CRISPLD2Q9H0B8 497 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 SLC38A10Q9HBR0 1119 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 PNMA2Q9UL42 364 aa13.91□□□□□ -0.18
HDAC4-216ENST00000544989 DIS3Q9Y2L1 958 aaKnown RBP13.91□□□□□ -0.18
HDAC4-216ENST00000544989 PARP14Q460N5 1801 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 FARP2O94887 1054 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-216ENST00000544989 MCCP23508 829 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 CACNB2Q08289 660 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-216ENST00000544989 TKFCQ3LXA3 575 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 SNRNP48Q6IEG0 339 aaKnown RBP13.9□□□□□ -0.18
HDAC4-216ENST00000544989 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.9□□□□□ -0.181e-6■■■□□ 16.2
HDAC4-216ENST00000544989 DGKHQ86XP1 1220 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 TBC1D10CQ8IV04 446 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 CHST13Q8NET6 341 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 INCENPQ9NQS7 918 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 NRBP1Q9UHY1 535 aa13.9□□□□□ -0.18
HDAC4-216ENST00000544989 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-216ENST00000544989 NMT2O60551 498 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 TRDNQ13061 729 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 CCL14Q16627 93 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 MSL3Q8N5Y2 521 aaKnown RBP13.89□□□□□ -0.19
HDAC4-216ENST00000544989 TMEM47Q9BQJ4 181 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 NBPF3Q9H094 633 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 TACC3Q9Y6A5 838 aa13.89□□□□□ -0.19
HDAC4-216ENST00000544989 SGSM2O43147 1006 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 CCDC96Q2M329 555 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 KIAA1211Q6ZU35 1233 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 UBE2Q1Q7Z7E8 422 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 NPLOC4Q8TAT6 608 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 OGDHLQ9ULD0 1010 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 COLQQ9Y215 455 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-216ENST00000544989 NEDD4P46934 1319 aa13.88□□□□□ -0.19
HDAC4-216ENST00000544989 LAMA4Q16363 1823 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 COBLO75128 1261 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 KDM4AO75164 1064 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 IGHA2P01877 340 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 TRIM32Q13049 653 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 BMP2KLQ5H9B9 411 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 GPATCH4Q5T3I0 446 aaKnown RBP13.87□□□□□ -0.19
HDAC4-216ENST00000544989 CASC1Q6TDU7 716 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 BTNL9Q6UXG8 535 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 NECAB2Q7Z6G3 386 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 CPXCR1Q8N123 301 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 ANKS1AQ92625 1134 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 DDX11Q96FC9 970 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 MAML3Q96JK9 1138 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 CCDC136Q96JN2 1154 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 UBAC1Q9BSL1 405 aa13.87□□□□□ -0.19
HDAC4-216ENST00000544989 COL11A1P12107 1806 aaPredicted RBP13.87□□□□□ -0.19
HDAC4-216ENST00000544989 KCTD1Q719H9 257 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 ZNF467Q7Z7K2 595 aaPredicted RBP13.86□□□□□ -0.19
HDAC4-216ENST00000544989 ANKRD35Q8N283 1001 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 ZSCAN10Q96SZ4 725 aaPredicted RBP13.86□□□□□ -0.19
HDAC4-216ENST00000544989 ACAD9Q9H845 621 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 KAT14Q9H8E8 782 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 RAVER2Q9HCJ3 691 aaKnown RBP13.86□□□□□ -0.19
HDAC4-216ENST00000544989 FLRT1Q9NZU1 646 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 UNC80Q8N2C7 3258 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 PFASO15067 1338 aa13.86□□□□□ -0.19
HDAC4-216ENST00000544989 B4E1Z4 1266 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 SNHG28P0DPA3 235 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 PDHBP11177 359 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 CYBAP13498 195 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 CNGA1P29973 690 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 CYP2C19P33261 490 aa13.85□□□□□ -0.19
HDAC4-216ENST00000544989 SART3Q15020 963 aaKnown RBP13.85□□□□□ -0.19
HDAC4-216ENST00000544989 ZNF792Q3KQV3 632 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms