RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-213ENST00000471978 SLC4A3P48751 1232 aa26.78■■□□□ 1.88
C9orf3-213ENST00000471978 ATN1P54259 1190 aaPredicted RBP26.78■■□□□ 1.88
C9orf3-213ENST00000471978 CPXCR1Q8N123 301 aa26.78■■□□□ 1.88
C9orf3-213ENST00000471978 TINF2Q9BSI4 451 aa26.78■■□□□ 1.88
C9orf3-213ENST00000471978 NRBP1Q9UHY1 535 aa26.78■■□□□ 1.88
C9orf3-213ENST00000471978 RIPK3Q9Y572 518 aa26.78■■□□□ 1.88
C9orf3-213ENST00000471978 KBTBD13C9JR72 458 aa26.77■■□□□ 1.88
C9orf3-213ENST00000471978 MYCNP04198 464 aaPredicted RBP26.77■■□□□ 1.88
C9orf3-213ENST00000471978 CTDSPL2Q05D32 466 aa26.77■■□□□ 1.88
C9orf3-213ENST00000471978 AAMPQ13685 434 aa26.77■■□□□ 1.88
C9orf3-213ENST00000471978 SLFN13Q68D06 897 aa26.77■■□□□ 1.88
C9orf3-213ENST00000471978 ATP2A1O14983 1001 aa26.76■■□□□ 1.87
C9orf3-213ENST00000471978 BMP3P12645 472 aa26.76■■□□□ 1.87
C9orf3-213ENST00000471978 VPS53Q5VIR6 699 aa26.76■■□□□ 1.87
C9orf3-213ENST00000471978 SLC38A10Q9HBR0 1119 aa26.76■■□□□ 1.87
C9orf3-213ENST00000471978 RAVER2Q9HCJ3 691 aaKnown RBP26.76■■□□□ 1.87
C9orf3-213ENST00000471978 HELLSQ9NRZ9 838 aa26.76■■□□□ 1.87
C9orf3-213ENST00000471978 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.76■■□□□ 1.87
C9orf3-213ENST00000471978 SOX1O00570 391 aaPredicted RBP26.75■■□□□ 1.87
C9orf3-213ENST00000471978 DDX11Q96FC9 970 aa26.75■■□□□ 1.87
C9orf3-213ENST00000471978 LNPKQ9C0E8 428 aa26.75■■□□□ 1.87
C9orf3-213ENST00000471978 INCENPQ9NQS7 918 aa26.75■■□□□ 1.87
C9orf3-213ENST00000471978 ISY1Q9ULR0 285 aaKnown RBP26.75■■□□□ 1.87
C9orf3-213ENST00000471978 PLXNA1Q9UIW2 1896 aa26.74■■□□□ 1.87
C9orf3-213ENST00000471978 TSPY2A6NKD2 308 aa26.74■■□□□ 1.87
C9orf3-213ENST00000471978 PPP4R3BQ5MIZ7 849 aa26.74■■□□□ 1.87
C9orf3-213ENST00000471978 UBE2OQ9C0C9 1292 aaKnown RBP26.74■■□□□ 1.87
C9orf3-213ENST00000471978 TAL1P17542 331 aaPredicted RBP26.73■■□□□ 1.87
C9orf3-213ENST00000471978 LRRC41Q15345 812 aa26.73■■□□□ 1.87
C9orf3-213ENST00000471978 LRCH3Q96II8 777 aa26.73■■□□□ 1.87
C9orf3-213ENST00000471978 FAM227BQ96M60 508 aa26.73■■□□□ 1.87
C9orf3-213ENST00000471978 RWDD1Q9H446 243 aaPredicted RBP26.73■■□□□ 1.87
C9orf3-213ENST00000471978 ANAPC4Q9UJX5 808 aa26.73■■□□□ 1.87
C9orf3-213ENST00000471978 STX8Q9UNK0 236 aa26.73■■□□□ 1.87
C9orf3-213ENST00000471978 TMEM232C9JQI7 657 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 RARBP10826 455 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 OAZ1P54368 228 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 RTP1P59025 263 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 MDM2Q00987 491 aaPredicted RBP26.72■■□□□ 1.87
C9orf3-213ENST00000471978 MCMDC2Q4G0Z9 681 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 B4GALNT3Q6L9W6 998 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 TDHQ8IZJ6 230 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 MSL3Q8N5Y2 521 aaKnown RBP26.72■■□□□ 1.87
C9orf3-213ENST00000471978 CHMP4CQ96CF2 233 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 GMCL1Q96IK5 515 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 XPNPEP3Q9NQH7 507 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 CNPY2Q9Y2B0 182 aa26.72■■□□□ 1.87
C9orf3-213ENST00000471978 DNAJC25-GNG10A0A024R161 153 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 A0A0D9SFI3 127 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 TRIM6-TRIM34B2RNG4 842 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 RANBP6O60518 1105 aaKnown RBP26.71■■□□□ 1.87
C9orf3-213ENST00000471978 ZNF865P0CJ78 1059 aaPredicted RBP26.71■■□□□ 1.87
C9orf3-213ENST00000471978 ADCYAP1R1P41586 468 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 SLC1A4P43007 532 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 STAT2P52630 851 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 ALX1Q15699 326 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 SLC39A5Q6ZMH5 540 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 TICAM2Q86XR7 235 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 IL17RBQ9NRM6 502 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 ATP11BQ9Y2G3 1177 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 TACC3Q9Y6A5 838 aa26.71■■□□□ 1.87
C9orf3-213ENST00000471978 NMT2O60551 498 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 FDX1P10109 184 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 MCCP23508 829 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 IKQ13123 557 aaPredicted RBP26.7■■□□□ 1.86
C9orf3-213ENST00000471978 SMC5Q8IY18 1101 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 ANKRD35Q8N283 1001 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 CHST13Q8NET6 341 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 CHURC1Q8WUH1 139 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 FBXO40Q9UH90 709 aa26.7■■□□□ 1.86
C9orf3-213ENST00000471978 SYNGAP1Q96PV0 1343 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 SMCHD1A6NHR9 2005 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 AKR1A1P14550 325 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.69■■□□□ 1.86
C9orf3-213ENST00000471978 FAM160B2Q86V87 743 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 STAG1Q8WVM7 1258 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 FERMT2Q96AC1 680 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 LBHD1Q9BQE6 289 aaPredicted RBP26.69■■□□□ 1.86
C9orf3-213ENST00000471978 PRKAG2Q9UGJ0 569 aa26.69■■□□□ 1.86
C9orf3-213ENST00000471978 ORC4O43929 436 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 PGK1P00558 417 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 FGAP02671 866 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 NMIQ13287 307 aaPredicted RBP26.68■■□□□ 1.86
C9orf3-213ENST00000471978 MAMDC4Q6UXC1 1216 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 RNF180Q86T96 592 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 RILPL2Q969X0 211 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 HOMER2Q9NSB8 354 aa26.68■■□□□ 1.86
C9orf3-213ENST00000471978 SNAI1O95863 264 aaPredicted RBP26.67■■□□□ 1.86
C9orf3-213ENST00000471978 FGRP09769 529 aa26.67■■□□□ 1.86
C9orf3-213ENST00000471978 LRIT3Q3SXY7 679 aa26.67■■□□□ 1.86
C9orf3-213ENST00000471978 KCTD1Q719H9 257 aa26.67■■□□□ 1.86
C9orf3-213ENST00000471978 ZNF467Q7Z7K2 595 aaPredicted RBP26.67■■□□□ 1.86
C9orf3-213ENST00000471978 TOMM22Q9NS69 142 aa26.67■■□□□ 1.86
C9orf3-213ENST00000471978 PHF24Q9UPV7 400 aa26.67■■□□□ 1.86
C9orf3-213ENST00000471978 PLA2G6O60733 806 aa26.66■■□□□ 1.86
C9orf3-213ENST00000471978 IGHDP01880 384 aa26.66■■□□□ 1.86
C9orf3-213ENST00000471978 HSPD1P10809 573 aaKnown RBP26.66■■□□□ 1.86
C9orf3-213ENST00000471978 SNX17Q15036 470 aa26.66■■□□□ 1.86
C9orf3-213ENST00000471978 TRIM60Q495X7 471 aa26.66■■□□□ 1.86
C9orf3-213ENST00000471978 RCSD1Q6JBY9 416 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms