RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HAND2P61296 217 aa20.93■□□□□ 0.94
COL7A1-205ENST00000465238 TMEM132BQ14DG7 1078 aa20.93■□□□□ 0.94
COL7A1-205ENST00000465238 LRRC26Q2I0M4 334 aa20.93■□□□□ 0.94
COL7A1-205ENST00000465238 SAMD1Q6SPF0 538 aaPredicted RBP20.93■□□□□ 0.94
COL7A1-205ENST00000465238 TRPV1Q8NER1 839 aa20.93■□□□□ 0.94
COL7A1-205ENST00000465238 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.93■□□□□ 0.94
COL7A1-205ENST00000465238 DNM1LO00429 736 aa20.92■□□□□ 0.94
COL7A1-205ENST00000465238 MAGEA10P43363 369 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-205ENST00000465238 IMMTQ16891 758 aaKnown RBP20.92■□□□□ 0.94
COL7A1-205ENST00000465238 SENP6Q9GZR1 1112 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-205ENST00000465238 FBXO28Q9NVF7 368 aa20.92■□□□□ 0.94
COL7A1-205ENST00000465238 PPP1R9AQ9ULJ8 1098 aa20.92■□□□□ 0.94
COL7A1-205ENST00000465238 U3KPZ7 1027 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-205ENST00000465238 RAD21O60216 631 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 PTH1RQ03431 593 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 FAM83BQ5T0W9 1011 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 RIOX2Q8IUF8 465 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 ARRDC4Q8NCT1 418 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 RNF41Q9H4P4 317 aaPredicted RBP20.91■□□□□ 0.94
COL7A1-205ENST00000465238 TOMM22Q9NS69 142 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 NYAP2Q9P242 653 aa20.91■□□□□ 0.94
COL7A1-205ENST00000465238 VWA5AO00534 786 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 SOX1O00570 391 aaPredicted RBP20.9■□□□□ 0.94
COL7A1-205ENST00000465238 SEPT4O43236 478 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 COPB2P35606 906 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 MFSD6Q6ZSS7 791 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 MAML3Q96JK9 1138 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 ANO2Q9NQ90 1003 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 INCENPQ9NQS7 918 aa20.9■□□□□ 0.94
COL7A1-205ENST00000465238 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.9■□□□□ 0.94
COL7A1-205ENST00000465238 ORC4O43929 436 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 TSPY3P0CV98 308 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 TSPY8P0CW00 308 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 STAT3P40763 770 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 RRP12Q5JTH9 1297 aaKnown RBP20.89■□□□□ 0.93
COL7A1-205ENST00000465238 AKNAD1Q5T1N1 836 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 MAP4K1Q92918 833 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 MMP19Q99542 508 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 ZNF214Q9UL59 606 aaPredicted RBP20.89■□□□□ 0.93
COL7A1-205ENST00000465238 GTF3C3Q9Y5Q9 886 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 LAMA4Q16363 1823 aa20.89■□□□□ 0.93
COL7A1-205ENST00000465238 F5H6K3 240 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 RANBP6O60518 1105 aaKnown RBP20.88■□□□□ 0.93
COL7A1-205ENST00000465238 FGRP09769 529 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 PCP11498 1178 aaKnown RBP20.88■□□□□ 0.93
COL7A1-205ENST00000465238 TFAP4Q01664 338 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 KLRC3Q07444 240 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 KCTD2Q14681 263 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 FAM47AQ5JRC9 791 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 TDHQ8IZJ6 230 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 STAG1Q8WVM7 1258 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 LRCH3Q96II8 777 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 UBE2OQ9C0C9 1292 aaKnown RBP20.88■□□□□ 0.93
COL7A1-205ENST00000465238 LSG1Q9H089 658 aaKnown RBP20.88■□□□□ 0.93
COL7A1-205ENST00000465238 NRBP1Q9UHY1 535 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 MYH4Q9Y623 1939 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 PLXNA1Q9UIW2 1896 aa20.88■□□□□ 0.93
COL7A1-205ENST00000465238 TSPY2A6NKD2 308 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 KBTBD13C9JR72 458 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 LRIT3Q3SXY7 679 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 TBC1D10CQ8IV04 446 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 REPS2Q8NFH8 660 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 NEDD1Q8NHV4 660 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 SLF1Q9BQI6 1058 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 DIS3Q9Y2L1 958 aaKnown RBP20.87■□□□□ 0.93
COL7A1-205ENST00000465238 TACC3Q9Y6A5 838 aa20.87■□□□□ 0.93
COL7A1-205ENST00000465238 IGKV6D-41A0A0C4DH26 115 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 PRAMEF19Q5SWL8 479 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 GJC2Q5T442 439 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-205ENST00000465238 GPR153Q6NV75 609 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 NUP88Q99567 741 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-205ENST00000465238 TEX13BQ9BXU2 312 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 CLIP2Q9UDT6 1046 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 SYNPO2Q9UMS6 1093 aa20.86■□□□□ 0.93
COL7A1-205ENST00000465238 RBM8AQ9Y5S9 174 aaKnown RBP20.86■□□□□ 0.93
COL7A1-205ENST00000465238 SMCHD1A6NHR9 2005 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 NDUFB10O96000 172 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 PGK2P07205 417 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 ATN1P54259 1190 aaPredicted RBP20.85■□□□□ 0.93
COL7A1-205ENST00000465238 ZNF792Q3KQV3 632 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 ANO1Q5XXA6 986 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 PRPF38AQ8NAV1 312 aaKnown RBP20.85■□□□□ 0.93
COL7A1-205ENST00000465238 MKL1Q969V6 931 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 TINF2Q9BSI4 451 aa20.85■□□□□ 0.93
COL7A1-205ENST00000465238 PPP4R3BQ5MIZ7 849 aa20.84■□□□□ 0.93
COL7A1-205ENST00000465238 ESR2Q92731 530 aa20.84■□□□□ 0.93
COL7A1-205ENST00000465238 MTMR4Q9NYA4 1195 aa20.84■□□□□ 0.93
COL7A1-205ENST00000465238 TTLL1O95922 423 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 CYP21A2P08686 494 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 NT5C2P49902 561 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 RTP1P59025 263 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 MDM2Q00987 491 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-205ENST00000465238 SNRNP48Q6IEG0 339 aaKnown RBP20.83■□□□□ 0.93
COL7A1-205ENST00000465238 CEP95Q96GE4 821 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 LBHD1Q9BQE6 289 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-205ENST00000465238 KRT23Q9C075 422 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 CNNM2Q9H8M5 875 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 PRKAG2Q9UGJ0 569 aa20.83■□□□□ 0.93
COL7A1-205ENST00000465238 PLIN4Q96Q06 1357 aa20.83■□□□□ 0.92
COL7A1-205ENST00000465238 ATP2A1O14983 1001 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms