RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FMNL1O95466 1100 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 SH3BGRP55822 239 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 GRM1Q13255 1194 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 ERVV-2B6SEH9 535 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 MYL1P05976 194 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 XRCC5P13010 732 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 POLA2Q14181 598 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 NCAPH2Q6IBW4 605 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 NELFCDQ8IXH7 590 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 AATFQ9NY61 560 aaKnown RBP eCLIP20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 MAST3O60307 1309 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 NECTIN1Q15223 517 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 TERF2Q15554 542 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 DBNLQ9UJU6 430 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 SHROOM2Q13796 1616 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 PABPN1LA6NDY0 278 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 CCDC169A6NNP5 214 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 OR52Z1P0C646 297 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 STX2P32856 288 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 GRK7Q8WTQ7 553 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 DHTKD1Q96HY7 919 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 HINFPQ9BQA5 517 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 PARD6BQ9BYG5 372 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 CTSWP56202 376 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 RBL2Q08999 1139 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 BIRC3Q13489 604 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 RNF26Q9BY78 433 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 FBXO38Q6PIJ6 1188 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 RUNDC3BQ96NL0 473 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 ATP8A2Q9NTI2 1148 aa20.93■□□□□ 0.94
CCDC88B-204ENST00000463837 TFAP4Q01664 338 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 BZW2Q9Y6E2 419 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 TNKSO95271 1327 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 IGSF1Q8N6C5 1336 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 CCT5P48643 541 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 GOLGA8FQ08AF8 430 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 GOLGA8DPQ0D2H9 430 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 SNCBQ16143 134 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 ARMC9Q7Z3E5 817 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 TACO1Q9BSH4 297 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 MRPL44Q9H9J2 332 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 SMCO2A6NFE2 343 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 EXOC3O60645 756 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 MGARPQ8TDB4 240 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 SAMD9LQ8IVG5 1584 aa20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 IRX5P78411 483 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-204ENST00000463837 I3L4J1 428 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 PNMA6AP0CW24 399 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 FNBP4Q8N3X1 1017 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 U2AF1L4Q8WU68 220 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 METTL14Q9HCE5 456 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 MLH3Q9UHC1 1453 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 GCNT3O95395 438 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 RAD51AP2Q09MP3 1159 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 VPS52Q8N1B4 723 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 CMTR1Q8N1G2 835 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 MAN1B1Q9UKM7 699 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 STK38LQ9Y2H1 464 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 FAN1Q9Y2M0 1017 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 TROVE2P10155 538 aaKnown RBP eCLIP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 KRT15P19012 456 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 APOA5Q6Q788 366 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 HOOK2Q96ED9 719 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 BPIFA3Q9BQP9 254 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 EFCC1Q9HA90 598 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 A0A087WWV3 80 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 CHMP2AO43633 222 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 MYCT1Q8N699 235 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 SSX2IPQ9Y2D8 614 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 LUC7L3O95232 432 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 PCCAP05165 728 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 SLFN14P0C7P3 912 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 PTGDRQ13258 359 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 PI4K2BQ8TCG2 481 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 PKD2L1Q9P0L9 805 aa20.91■□□□□ 0.94
CCDC88B-204ENST00000463837 HIP1RO75146 1068 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 UFL1O94874 794 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 ZNF589Q86UQ0 364 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 CCDC170Q8IYT3 715 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 RAB3IL1Q8TBN0 382 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 KCNQ3O43525 872 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 SEPT6Q14141 434 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 TTC19Q6DKK2 380 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 TUBGCP2Q9BSJ2 902 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 ARMCX3Q9UH62 379 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 TRPM1Q7Z4N2 1603 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 ANKRD20A3Q5VUR7 823 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 NEK8Q86SG6 692 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 ANKRD42Q8N9B4 389 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 MICAL1Q8TDZ2 1067 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 FAM114A2Q9NRY5 505 aa20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 TYW1Q9NV66 732 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-204ENST00000463837 LARGE1O95461 756 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 H2AFZP0C0S5 128 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 HSPA1LP34931 641 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 H2AFVQ71UI9 128 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 PLA2G4DQ86XP0 818 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 RWDD2AQ9UIY3 292 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms