RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PPFIBP1Q86W92 1011 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SH3RF3Q8TEJ3 882 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SHISA4Q96DD7 197 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 DYNLL2Q96FJ2 89 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 CTAGE1Q96RT6 745 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 BAG1Q99933 345 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SAP30BPQ9UHR5 308 aaKnown RBP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 A0A1B0GUL6 1792 aa10.9□□□□□ -0.67
COL6A3-204ENST00000392003 GOLGA6L9A6NEM1 432 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 PLCG2P16885 1265 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 EVX2Q03828 476 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 TNFRSF25Q93038 417 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 CD209Q9NNX6 404 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 SAMSN1Q9NSI8 373 aaKnown RBP10.89□□□□□ -0.67
COL6A3-204ENST00000392003 CCDC88AQ3V6T2 1871 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 STX17P56962 302 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 MAPKAPK5Q8IW41 473 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 RMND1Q9NWS8 449 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 ZNF215Q9UL58 517 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-204ENST00000392003 PCDHA4Q9UN74 947 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-204ENST00000392003 MMP10P09238 476 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 ZNF18P17022 549 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 PPP4CP60510 307 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 ETF1P62495 437 aaKnown RBP10.89□□□□□ -0.67
COL6A3-204ENST00000392003 GTF2IP78347 998 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 DDR1Q08345 913 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 GRM4Q14833 912 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 ARL6IP4Q66PJ3 421 aaKnown RBP10.89□□□□□ -0.67
COL6A3-204ENST00000392003 RCSD1Q6JBY9 416 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 SPATA20Q8TB22 786 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 LZTS2Q9BRK4 669 aa10.89□□□□□ -0.67
COL6A3-204ENST00000392003 NOM1Q5C9Z4 860 aaKnown RBP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 RRAGBQ5VZM2 374 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 GALNT17Q6IS24 598 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 HEATR3Q7Z4Q2 680 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 SLC51AQ86UW1 340 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 TEX11Q8IYF3 940 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 FLAD1Q8NFF5 587 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 GPKOWQ92917 476 aaPredicted RBP eCLIP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 DNAI1Q9UI46 699 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 A0A087X0B3 334 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 STX10O60499 249 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 LONP1P36776 959 aaKnown RBP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 DPYDQ12882 1025 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 NPY5RQ15761 445 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 DPP8Q6V1X1 898 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 SH3RF1Q7Z6J0 888 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 CCDC12Q8WUD4 166 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 ANKS1AQ92625 1134 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 STAMQ92783 540 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 DRC1Q96MC2 740 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 GTPBP6O43824 516 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-204ENST00000392003 STAT6P42226 847 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 GOLGA8FQ08AF8 430 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 GOLGA8DPQ0D2H9 430 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 TERF2Q15554 542 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 PTPN21Q16825 1174 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 ICE2Q659A1 982 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 DTHD1Q6ZMT9 781 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 CEP120Q8N960 986 aa10.88□□□□□ -0.67
COL6A3-204ENST00000392003 BAZ2BQ9UIF8 2168 aaKnown RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 USP17L3A6NCW0 530 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 USP17L4A6NCW7 530 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 TRIM66O15016 1216 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 PDE6BP35913 854 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 SPAG1Q07617 926 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 USP17L1Q7RTZ2 530 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 PRPF38AQ8NAV1 312 aaKnown RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 MNS1Q8NEH6 495 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CALCOCO1Q9P1Z2 691 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 BTAF1O14981 1849 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 AKR1B15C9JRZ8 316 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 POLRMTO00411 1230 aaKnown RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 WNT7AO00755 349 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CASP1P29466 404 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 ALDH1B1P30837 517 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 UBA7P41226 1012 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 BTDP43251 543 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 HNRNPH2P55795 449 aaKnown RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 BIRC2Q13490 618 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 SOGA3Q5TF21 947 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 COL23A1Q86Y22 540 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 STAG2Q8N3U4 1231 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 TBC1D16Q8TBP0 767 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 TBC1D22AQ8WUA7 517 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CCDC47Q96A33 483 aaKnown RBP10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CRAMP1Q96RY5 1269 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 IL17RBQ9NRM6 502 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 TCP11L1Q9NUJ3 509 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 INTS13Q9NVM9 706 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CTNND2Q9UQB3 1225 aa10.87□□□□□ -0.67
COL6A3-204ENST00000392003 CCDC189A1A4V9 331 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 ADKP55263 362 aaKnown RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 FEZ1Q99689 392 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 BLZF1Q9H2G9 400 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 ST7Q9NRC1 585 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 PPP2R2CQ9Y2T4 447 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 MAST2Q6P0Q8 1798 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms