RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 V9GY48 417 aaPredicted RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 PASKQ96RG2 1323 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 MYH8P13535 1937 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 CLRN2A0PK11 232 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 PALM3A6NDB9 673 aaPredicted RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 TRAF5O00463 557 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 PLEKHA8P1O95397 391 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 KIF23Q02241 960 aaPredicted RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 CEBPZQ03701 1054 aaKnown RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 DNTTIP2Q5QJE6 756 aaKnown RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 MYSM1Q5VVJ2 828 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 SRBD1Q8N5C6 995 aaKnown RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 ZC3H15Q8WU90 426 aaKnown RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 NAT10Q9H0A0 1025 aaKnown RBP19.23■□□□□ 0.67
CPSF4-201ENST00000292476 BRMS1Q9HCU9 246 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 PGAP2Q9UHJ9 254 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 PCDHA7Q9UN72 937 aa19.23■□□□□ 0.67
CPSF4-201ENST00000292476 TBC1D12O60347 775 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 MMP1P03956 469 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 STK38Q15208 465 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 ASPRV1Q53RT3 343 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 FTOQ9C0B1 505 aaKnown RBP eCLIP19.22■□□□□ 0.67
CPSF4-201ENST00000292476 FOXP1Q9H334 677 aaPredicted RBP19.22■□□□□ 0.67
CPSF4-201ENST00000292476 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.22■□□□□ 0.676e-7■■□□□ 14.2
CPSF4-201ENST00000292476 GGA3Q9NZ52 723 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 NYAP2Q9P242 653 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 CLIP2Q9UDT6 1046 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 MAD2L2Q9UI95 211 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 SYNPO2Q9UMS6 1093 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 CNTNAP5Q8WYK1 1306 aa19.22■□□□□ 0.67
CPSF4-201ENST00000292476 CEP350Q5VT06 3117 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 NEMFO60524 1076 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 U2AF2P26368 475 aaKnown RBP eCLIP19.21■□□□□ 0.67
CPSF4-201ENST00000292476 ABCB5Q2M3G0 1257 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 NBPF9Q3BBW0 867 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 CEP57L1Q8IYX8 460 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 CMTR1Q8N1G2 835 aaKnown RBP19.21■□□□□ 0.67
CPSF4-201ENST00000292476 SPC24Q8NBT2 197 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 BPIFA3Q9BQP9 254 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 DNAJC18Q9H819 358 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 SH3GLB2Q9NR46 395 aa19.21■□□□□ 0.67
CPSF4-201ENST00000292476 SPTLC2O15270 562 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 PFKFB3Q16875 520 aaPredicted RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 ANGEL2Q5VTE6 544 aaKnown RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 OTUD7BQ6GQQ9 843 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 DLK2Q6UY11 383 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 MKL1Q969V6 931 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 DCPSQ96C86 337 aaKnown RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 AIFM3Q96NN9 605 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 SPZ1Q9BXG8 430 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 KLRF2D3W0D1 207 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 SCG2P13521 617 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 SF3A1Q15459 793 aaKnown RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 PKN1Q16512 942 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 GPATCH4Q5T3I0 446 aaKnown RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 PYCARDQ9ULZ3 195 aa19.2■□□□□ 0.66
CPSF4-201ENST00000292476 SCAF8Q9UPN6 1271 aaKnown RBP19.2■□□□□ 0.66
CPSF4-201ENST00000292476 CNTNAP1P78357 1384 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 PTGS1P23219 599 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 CALML3P27482 149 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 GUCY1A2P33402 732 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 ANO1Q5XXA6 986 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 KRT26Q7Z3Y9 468 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 HOOK2Q96ED9 719 aa19.19■□□□□ 0.66
CPSF4-201ENST00000292476 ADM5C9JUS6 153 aa19.18■□□□□ 0.66
CPSF4-201ENST00000292476 CMA1P23946 247 aa19.18■□□□□ 0.66
CPSF4-201ENST00000292476 C11orf57Q6ZUT1 292 aaPredicted RBP19.18■□□□□ 0.66
CPSF4-201ENST00000292476 NOSTRINQ8IVI9 506 aa19.18■□□□□ 0.66
CPSF4-201ENST00000292476 DRC7Q8IY82 874 aa19.18■□□□□ 0.66
CPSF4-201ENST00000292476 TIGD1Q96MW7 591 aa19.18■□□□□ 0.66
CPSF4-201ENST00000292476 BECN2A8MW95 431 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 hCG_1984214I3L0E3 225 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 SNHG28P0DPA3 235 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 PDHBP11177 359 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 GALNT17Q6IS24 598 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 CCDC186Q7Z3E2 898 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 DIS3L2Q8IYB7 885 aaKnown RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 STAG2Q8N3U4 1231 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 ZNF713Q8N859 430 aaPredicted RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 JMYQ8N9B5 988 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 CCDC148Q8NFR7 591 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 CCDC12Q8WUD4 166 aaPredicted RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 PHF20Q9BVI0 1012 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 CLIC4Q9Y696 253 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 TRPM7Q96QT4 1865 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 GREB1LQ9C091 1923 aaPredicted RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 PPP6R2O75170 966 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 KRT2P35908 639 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 ICA1Q05084 483 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 DHX8Q14562 1220 aaKnown RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 SLC39A14Q15043 492 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 RILPL1Q5EBL4 403 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 SULF1Q8IWU6 871 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 RRP36Q96EU6 259 aaKnown RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 ZNF408Q9H9D4 720 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 GJB4Q9NTQ9 266 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 GINM1Q9NU53 330 aa19.17■□□□□ 0.66
CPSF4-201ENST00000292476 SEC63Q9UGP8 760 aaKnown RBP19.17■□□□□ 0.66
CPSF4-201ENST00000292476 SIPA1L1O43166 1804 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms