RNA–Protein interactions for RNA: YKL172W

EBP2, Transcript of Required for 25S rRNA maturation and 60S ribosomal subunit assembly, yeast

Gene EBP2, Length 1,284 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EBP2	YKL172W	TKL1	P23254	680 aa	Known RBP	4.56	□□□□□ -1.68
EBP2	YKL172W	CHS3	P29465	1165 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	PDB1	P32473	366 aa	Known RBP	4.56	□□□□□ -1.68
EBP2	YKL172W	YKL050C	P35736	922 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	DIA4	P38705	446 aa	Predicted RBP	4.56	□□□□□ -1.68
EBP2	YKL172W	DPH1	P40487	425 aa	Known RBP	4.56	□□□□□ -1.68
EBP2	YKL172W	YFR020W	P43600	232 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	YMR178W	Q03219	274 aa	Known RBP	4.56	□□□□□ -1.68
EBP2	YKL172W	POS5	Q06892	414 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	PSR1	Q07800	427 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	INP53	Q12271	1107 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	YOR111W	Q99210	232 aa		4.56	□□□□□ -1.68
EBP2	YKL172W	YER145C-A	A0A023PYF4	145 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	CLB2	P24869	491 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	AGP2	P38090	596 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	FMP10	P40098	244 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	YIR016W	P40572	265 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	SNM1	P40993	198 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	MDV1	P47025	714 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	YGL036W	P53185	909 aa	Predicted RBP	4.55	□□□□□ -1.68
EBP2	YKL172W	NNF2	P53253	936 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	INN1	P53901	409 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	ECI1	Q05871	280 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	YDL121C	Q07541	149 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	RIX7	Q07844	837 aa	Known RBP	4.55	□□□□□ -1.68
EBP2	YKL172W	FRE3	Q08905	711 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	TCO89	Q08921	799 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	APL4	Q12028	832 aa		4.55	□□□□□ -1.68
EBP2	YKL172W	CHO1	P08456	276 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	VMA16	P23968	213 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	YCP4	P25349	247 aa	Known RBP	4.54	□□□□□ -1.68
EBP2	YKL172W	ASI1	P54074	624 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	MPS1	P54199	764 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	MCP2	Q06567	569 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	ENT4	Q07872	247 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	GSH2	Q08220	491 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	GEP3	Q08622	556 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	UBX3	Q12229	455 aa		4.54	□□□□□ -1.68
EBP2	YKL172W	CDC16	P09798	840 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	SNU114	P36048	1008 aa	Known RBP	4.53	□□□□□ -1.68
EBP2	YKL172W	YBL029W	P38201	376 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	RTS1	P38903	757 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	TMA108	P40462	946 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	BOP3	P53958	396 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	SVL3	Q03088	825 aa	Known RBP	4.53	□□□□□ -1.68
EBP2	YKL172W	RAD30	Q04049	632 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	ARP10	Q04549	284 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	YAP7	Q08182	245 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	ATG9	Q12142	997 aa		4.53	□□□□□ -1.68
EBP2	YKL172W	RPL19A	P0CX82	189 aa	Known RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	RPL19B	P0CX83	189 aa	Predicted RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	GFD2	P25370	566 aa	Known RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	ADH7	P25377	361 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	PAH1	P32567	862 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	SAC6	P32599	642 aa	Known RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	MIA40	P36046	403 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	STV1	P37296	890 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	PCL6	P40038	420 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	VRG4	P40107	337 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	DIA3	P52290	468 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	YSA1	Q01976	231 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	YPL068C	Q02749	293 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	CTL1	Q03220	320 aa	Known RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	UTP21	Q06078	939 aa	Predicted RBP	4.52	□□□□□ -1.69
EBP2	YKL172W	DSE3	Q08729	430 aa		4.52	□□□□□ -1.69
EBP2	YKL172W	SEM1	O94742	89 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	RPB8	P20436	146 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	GAC1	P28006	793 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	RFC1	P38630	861 aa	Known RBP	4.51	□□□□□ -1.69
EBP2	YKL172W	YEL068C	P39977	110 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	NOP16	P40007	231 aa	Known RBP	4.51	□□□□□ -1.69
EBP2	YKL172W	BUR6	P40096	142 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	STR3	P53101	465 aa	Known RBP	4.51	□□□□□ -1.69
EBP2	YKL172W	YTP1	P53584	459 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	YNL181W	P53878	407 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	ZDS2	P54786	942 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	ETT1	Q08421	412 aa	Known RBP	4.51	□□□□□ -1.69
EBP2	YKL172W	HUA2	Q12134	243 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	ENT1	Q12518	454 aa		4.51	□□□□□ -1.69
EBP2	YKL172W	YPT1	P01123	206 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	PWP1	P21304	576 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	LCB1	P25045	558 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	ATO2	P32907	282 aa		4.5	□□□□□ -1.69
EBP2	YKL172W	MUD2	P36084	527 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	NOP4	P37838	685 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	GND1	P38720	489 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	RPS7B	P48164	190 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	YNL234W	P53857	426 aa		4.5	□□□□□ -1.69
EBP2	YKL172W	YLR281C	Q05863	155 aa		4.5	□□□□□ -1.69
EBP2	YKL172W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
EBP2	YKL172W	NOP58	Q12499	511 aa	Known RBP	4.5	□□□□□ -1.69
EBP2	YKL172W	MAL33	P38157	468 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	LYS14	P40971	790 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	IRC8	P47046	822 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	SGM1	P47166	707 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	LYS20	P48570	428 aa	Known RBP	4.49	□□□□□ -1.69
EBP2	YKL172W	SGF73	P53165	657 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	IZH1	Q03419	316 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	YKU80	Q04437	629 aa		4.49	□□□□□ -1.69
EBP2	YKL172W	VIP1	Q06685	1146 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 139.5 ms