RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	LSB1	P53281	241 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	NOG2	P53742	486 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	TIM50	Q02776	476 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	SRL4	Q03085	281 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	RRP17	Q04031	235 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	FAR8	Q05040	523 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	ATG38	Q05789	226 aa	Known RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	CDA1	Q06702	301 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	PML1	Q07930	204 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC48	YDL126C	RTN2	Q12443	393 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	YKL068W-A	Q3E826	78 aa		4.62	□□□□□ -1.67
CDC48	YDL126C	ARG3	P05150	338 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	ADH4	P10127	382 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	DAP2	P18962	818 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	UBC1	P21734	215 aa	Known RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	TRK2	P28584	889 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	ASF2	P32448	525 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	PEX18	P38855	283 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	OSW5	P40219	148 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	MAD2	P40958	196 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	SLD3	P53135	668 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	RET3	P53600	189 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	YKR011C	Q02209	353 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	SWP1	Q02795	286 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	MSC2	Q03455	724 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	SIZ1	Q04195	904 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	ASM4	Q05166	528 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	SSQ1	Q05931	657 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CDC48	YDL126C	RPB2	P08518	1224 aa	Known RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	SSC1	P0CS90	654 aa	Known RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	PMR1	P13586	950 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	MNE1	P24720	663 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	CDC15	P27636	974 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	KRE6	P32486	720 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	PTR2	P32901	601 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	STP2	P38704	541 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	YHL012W	P38709	493 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	STT3	P39007	718 aa	Known RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	YFL066C	P43538	392 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	ALY2	P47029	1046 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	NIT3	P49954	291 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	ZIP2	P53061	704 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	MNP1	P53163	194 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	SQS1	P53866	767 aa	Known RBP	4.61	□□□□□ -1.67
CDC48	YDL126C	TOF2	Q02208	771 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	WAR1	Q03631	944 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	DIN7	Q12086	430 aa		4.61	□□□□□ -1.67
CDC48	YDL126C	GLN4	P13188	809 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	ENA1	P13587	1091 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	SAM2	P19358	384 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	CWH43	P25618	953 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	CSE1	P33307	960 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	MDL1	P33310	695 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	DBP7	P36120	742 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	FTH1	P38310	465 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	TDA3	P38758	523 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	MIP6	P38760	659 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	SAK1	P38990	1142 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	PSD1	P39006	500 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	EMP65	P40085	556 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	SEC28	P40509	296 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	LCB2	P40970	561 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	OYE3	P41816	400 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	VPS75	P53853	264 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	ENA2	Q01896	1091 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	PEX25	Q02969	394 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	CSM3	Q04659	317 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	GFD1	Q04839	188 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	HCR1	Q05775	265 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	TLG2	Q08144	397 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	YPR027C	Q12079	277 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	RTK1	Q12100	620 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	ENA5	Q12691	1091 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	FKS1	P38631	1876 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	TUB2	P02557	457 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	AI3	P03877	415 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	CBP1	P07252	654 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	HPR1	P17629	752 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	STE50	P25344	346 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	PAP1	P29468	568 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	HXT4	P32467	576 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	CTF13	P35203	478 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	ADE17	P38009	592 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	POL12	P38121	705 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	APD1	P38281	316 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	KEL1	P38853	1164 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	TIF4631	P39935	952 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	LYS14	P40971	790 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	GCD14	P46959	383 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	ASE1	P50275	885 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	RCR2	Q03446	210 aa	Known RBP	4.6	□□□□□ -1.67
CDC48	YDL126C	YPS7	Q06325	596 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	RRT8	Q08219	342 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	VIK1	Q12045	647 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	PCD1	Q12524	340 aa		4.6	□□□□□ -1.67
CDC48	YDL126C	JIP3	O13555	125 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	YML002W	P0CF17	737 aa		4.59	□□□□□ -1.67
CDC48	YDL126C	PWP1	P21304	576 aa	Known RBP	4.59	□□□□□ -1.67
CDC48	YDL126C	SPB1	P25582	841 aa	Predicted RBP	4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 47.6 ms