RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	TVP15	Q03860	143 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	RAD30	Q04049	632 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	BUD22	Q04347	519 aa	Known RBP	4.97	□□□□□ -1.61
CDC28	YBR160W	YET3	Q07451	203 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	PSR1	Q07800	427 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	DIA2	Q08496	732 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC28	YBR160W	CIR2	Q08822	631 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	YPR071W	Q12346	211 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
CDC28	YBR160W	TUB1	P09733	447 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	COX11	P19516	300 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	SNT1	P25357	1226 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	BUD23	P25627	275 aa	Predicted RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	CDC20	P26309	610 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	YKU70	P32807	602 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	ATO2	P32907	282 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	BUD2	P33314	1104 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	RIM2	P38127	377 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	MRX3	P38172	270 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	SLM4	P38247	162 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	PCM1	P38628	557 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	UTP9	P38882	575 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	SSP120	P39931	234 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	SCC4	P40090	624 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	CHS6	P40955	746 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	FMP32	P43557	207 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	RSC8	P43609	557 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	MAD3	P47074	515 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	PMT3	P47190	753 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	SPT20	P50875	604 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	DCP2	P53550	970 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	YTP1	P53584	459 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	YDR239C	Q03780	787 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	CDA1	Q06702	301 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	IWR1	Q07532	353 aa	Predicted RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	CUE5	Q08412	411 aa	Known RBP	4.96	□□□□□ -1.62
CDC28	YBR160W	MCH5	Q08777	521 aa		4.96	□□□□□ -1.62
CDC28	YBR160W	YPR089W	O13585	888 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
CDC28	YBR160W	GPA2	P10823	449 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	SLY1	P22213	666 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	SAN1	P22470	610 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	YCR015C	P25616	317 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	COT1	P32798	439 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	PEX2	P32800	271 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	TIF3	P34167	436 aa	Known RBP	4.95	□□□□□ -1.62
CDC28	YBR160W	STV1	P37296	890 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	GOS1	P38736	223 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	MKT1	P40850	830 aa	Known RBP	4.95	□□□□□ -1.62
CDC28	YBR160W	GSM1	P42950	618 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	FAR3	P46671	204 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	RFX1	P48743	811 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	ORC5	P50874	479 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	LIF1	P53150	421 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	COG2	P53271	262 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	YNL247W	P53852	767 aa	Known RBP	4.95	□□□□□ -1.62
CDC28	YBR160W	CLU1	Q03690	1277 aa	Known RBP	4.95	□□□□□ -1.62
CDC28	YBR160W	YSH1	Q06224	779 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC28	YBR160W	YDL114W	Q07530	308 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	GUD1	Q07729	489 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	YOR352W	Q08816	343 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	GPB1	Q08886	897 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	OSW2	Q12202	724 aa		4.95	□□□□□ -1.62
CDC28	YBR160W	TEF1	P02994	458 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	PET122	P10355	254 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	TRX1	P22217	103 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
CDC28	YBR160W	MEF1	P25039	761 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	GFD2	P25370	566 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	PHO88	P38264	188 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SWC5	P38326	303 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	YBR238C	P38330	731 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	YBR259W	P38338	688 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	TSL1	P38427	1098 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	PEX18	P38855	283 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	PCF11	P39081	626 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SAW1	P39735	261 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	PEP8	P40335	379 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	CCT7	P42943	550 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SNZ3	P43545	298 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	STB2	P46679	850 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	BNA3	P47039	444 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SNZ2	P53824	298 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	ASI2	P53895	289 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	SFB2	P53953	876 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	PRO2	P54885	456 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SMP3	Q04174	516 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	ERB1	Q04660	807 aa	Known RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	SPC2	Q04969	178 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	COQ9	Q05779	260 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	ASA1	Q06822	443 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	YOR389W	Q08912	624 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	RRG1	Q12167	365 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC28	YBR160W	KCS1	Q12494	1050 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	MDM12	Q92328	271 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	ECM3	Q99252	613 aa		4.94	□□□□□ -1.62
CDC28	YBR160W	RIF1	P29539	1916 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC28	YBR160W	VBA3	P25594	458 aa		4.93	□□□□□ -1.62
CDC28	YBR160W	RPS5	P26783	225 aa	Known RBP	4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms