RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MYL5Q02045 173 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 KIAA1551Q9HCM1 1747 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 LAMB1P07942 1786 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 RGL2O15211 777 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 PCP11498 1178 aaKnown RBP11.31□□□□□ -0.6
VPS53-206ENST00000570359 IL1R1P14778 569 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 BLIDQ8IZY5 108 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 MTA3Q9BTC8 594 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 GPR75-ASB3A0A0A6YYF3 556 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 SMTNL1A8MU46 457 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 TPM3P06753 285 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 SRGNP10124 158 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 AKR1B1P15121 316 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 RBM6P78332 1123 aaKnown RBP11.31□□□□□ -0.6
VPS53-206ENST00000570359 NFIAQ12857 509 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 JAKMIP3Q5VZ66 844 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 SAMD1Q6SPF0 538 aaPredicted RBP11.31□□□□□ -0.6
VPS53-206ENST00000570359 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.31□□□□□ -0.6
VPS53-206ENST00000570359 MRFAP1L1Q96HT8 127 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 PIGSQ96S52 555 aa11.31□□□□□ -0.6
VPS53-206ENST00000570359 HOOK1Q9UJC3 728 aaKnown RBP11.31□□□□□ -0.6
VPS53-206ENST00000570359 ACTN4O43707 911 aaKnown RBP11.3□□□□□ -0.6
VPS53-206ENST00000570359 PARP1P09874 1014 aaKnown RBP11.3□□□□□ -0.6
VPS53-206ENST00000570359 SLC16A2P36021 539 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 RCAN1P53805 252 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 TERF1P54274 439 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 KARSQ15046 597 aaKnown RBP11.3□□□□□ -0.6
VPS53-206ENST00000570359 PPP2R5BQ15173 497 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 LETM2Q2VYF4 491 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 SARM1Q6SZW1 724 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 C2CD5Q86YS7 1000 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 TIGD1Q96MW7 591 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 SAMSN1Q9NSI8 373 aaKnown RBP11.3□□□□□ -0.6
VPS53-206ENST00000570359 TUBE1Q9UJT0 475 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 ATP6V0A2Q9Y487 856 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 NFE2L3Q9Y4A8 694 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 NAV1Q8NEY1 1877 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 DGKHQ86XP1 1220 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 ZFPM1Q8IX07 1006 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 COA7Q96BR5 231 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 EEF2KMTQ96G04 330 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 TMX1Q9H3N1 280 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 TMEM260Q9NX78 707 aa11.3□□□□□ -0.6
VPS53-206ENST00000570359 BIN2Q9UBW5 565 aaPredicted RBP11.3□□□□□ -0.6
VPS53-206ENST00000570359 TNNT1P13805 278 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 PPP4CP60510 307 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 GRM4Q14833 912 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 IL17AQ16552 155 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 CCDC96Q2M329 555 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 TNFRSF25Q93038 417 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 CRAMP1Q96RY5 1269 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 PDGFDQ9GZP0 370 aaPredicted RBP11.29□□□□□ -0.6
VPS53-206ENST00000570359 C16orf86Q6ZW13 317 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 SP8Q8IXZ3 490 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 NLGN1Q8N2Q7 840 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 HSD3B7Q9H2F3 369 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 TMEM60Q9H2L4 133 aa11.29□□□□□ -0.6
VPS53-206ENST00000570359 SEC63Q9UGP8 760 aaKnown RBP11.29□□□□□ -0.6
VPS53-206ENST00000570359 SNED1Q8TER0 1413 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 MDM2Q00987 491 aaPredicted RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 FAM177A1Q8N128 213 aaPredicted RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 TBC1D22AQ8WUA7 517 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 CPLX3Q8WVH0 158 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 PAGE5Q96GU1 130 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 PCDHA4Q9UN74 947 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 MAST2Q6P0Q8 1798 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 ADAMTSL1Q8N6G6 1762 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 CCNT1O60563 726 aaKnown RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 NPR1P16066 1061 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SFPQP23246 707 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS53-206ENST00000570359 HOXA10P31260 410 aaPredicted RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 SNAP25P60880 206 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 AOC3Q16853 763 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 KCTD1Q719H9 257 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SLF2Q8IX21 1173 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 MAP7D2Q96T17 732 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 ZNF287Q9HBT7 754 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SPTLC3Q9NUV7 552 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 PCDHA6Q9UN73 950 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 CTNND2Q9UQB3 1225 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 PCDHA8Q9Y5H6 950 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SMCO2A6NFE2 343 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 STXBP3O00186 592 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 CD44P16070 742 aaKnown RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 PLCG2P16885 1265 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 CDC25BP30305 580 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 EN1Q05925 392 aaPredicted RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 CUL4BQ13620 913 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SOGA3Q5TF21 947 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 TTBK2Q6IQ55 1244 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 GJA10Q969M2 543 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 COA1Q9GZY4 146 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 SCAF8Q9UPN6 1271 aaKnown RBP11.28□□□□□ -0.6
VPS53-206ENST00000570359 MYH1P12882 1939 aa11.28□□□□□ -0.6
VPS53-206ENST00000570359 PES1O00541 588 aaKnown RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 TAL1P17542 331 aaPredicted RBP11.27□□□□□ -0.61
VPS53-206ENST00000570359 CCZ1BP86790 482 aa11.27□□□□□ -0.61
VPS53-206ENST00000570359 CCZ1P86791 482 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms