RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 NIM1KQ8IY84 436 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 FGD4Q96M96 766 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 KRTAP3-3Q9BYR6 98 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 KRTAP3-2Q9BYR7 98 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 SRCIN1Q9C0H9 1055 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 PICK1Q9NRD5 415 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 STRN4Q9NRL3 753 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 ARFGEF1Q9Y6D6 1849 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 PRC1O43663 620 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 NEK4P51957 841 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 ZNF460Q14592 562 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 TCEA2Q15560 299 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 ZFYVE27Q5T4F4 411 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 FOXB2Q5VYV0 432 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 ADAMTSL4Q6UY14 1074 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 STRA8Q7Z7C7 330 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 TCF12Q99081 682 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 RSRP1Q9BUV0 290 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 AASDHPPTQ9NRN7 309 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 PGAP2Q9UHJ9 254 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 TRAK1Q9UPV9 953 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 BRCA1P38398 1863 aaKnown RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 A0A096LPE4 126 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 A0A1W2PPZ6 126 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 BLACEA4D250 179 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 CAPN5O15484 640 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 HTR3AP46098 478 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 HIRAP54198 1017 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 PCBP4P57723 403 aaKnown RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 PPP2R5AQ15172 486 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 GNPTABQ3T906 1256 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 ACBD5Q5T8D3 534 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 NXNQ6DKJ4 435 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 TRIM42Q8IWZ5 723 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 CYP4X1Q8N118 509 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 NUDT8Q8WV74 236 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 ABHD17AQ96GS6 310 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 NELL2Q99435 816 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 DZANK1Q9NVP4 752 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 PCDHA4Q9UN74 947 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 COL18A1P39060 1754 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 DAPK1P53355 1430 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 GRIA2P42262 883 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 LMOD3Q0VAK6 560 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 INO80DQ53TQ3 878 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 WIPI1Q5MNZ9 446 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 HGSNATQ68CP4 663 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 LYSMD3Q7Z3D4 306 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 KRT27Q7Z3Y8 459 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 ADAT2Q7Z6V5 191 aaKnown RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 FAM178BQ8IXR5 827 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 TIFAQ96CG3 184 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 NT5C1AQ9BXI3 368 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 PPCSQ9HAB8 311 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 PTPRHQ9HD43 1115 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 KIF15Q9NS87 1388 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 ANKARQ7Z5J8 1434 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 DCDC2CA8MYV0 355 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 MYBPC2Q14324 1141 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 SAMD3Q8N6K7 520 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 TRPM4Q8TD43 1214 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 TRMT2BQ96GJ1 504 aaKnown RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 NECAB3Q96P71 396 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 YIPF4Q9BSR8 244 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 TARS2Q9BW92 718 aaKnown RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 NDOR1Q9UHB4 597 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 INTUQ9ULD6 942 aa3.28□□□□□ -1.88
MCF2-204ENST00000414978 BRD4O60885 1362 aaPredicted RBP3.28□□□□□ -1.88
MCF2-204ENST00000414978 FAM208AQ9UK61 1670 aaKnown RBP3.28□□□□□ -1.89
MCF2-204ENST00000414978 NPHP3Q7Z494 1330 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 SH3BP5O60239 455 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 MYL3P08590 195 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ZNF165P49910 485 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 IDI1Q13907 227 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 TNNI3KQ59H18 835 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 C12orf40Q86WS4 652 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CCNJLQ8IV13 435 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 SULF2Q8IWU5 870 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CNPY4Q8N129 248 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 PARD3BQ8TEW8 1205 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CHAC2Q8WUX2 184 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 TMEM39AQ9NV64 488 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ZMYM5Q9UJ78 669 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ARHGEF10O15013 1369 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 DHX57Q6P158 1386 aaKnown RBP3.27□□□□□ -1.89
MCF2-204ENST00000414978 SPEM2Q0P670 501 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 INPP5AQ14642 412 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 Q6ZVU0 165 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 MICALL1Q8N3F8 863 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 GATAD2BQ8WXI9 593 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 SLC30A3Q99726 388 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ARPC5LQ9BPX5 153 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 SPON1Q9HCB6 807 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CDC14CA4D256 554 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 TTLL8A6PVC2 850 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 WNT7AO00755 349 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 GIPC1O14908 333 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ADCY3O60266 1144 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 SELPP16109 830 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CCNFP41002 786 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms