RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 UPF1Q92900 1129 aaKnown RBP eCLIP9.63□□□□□ -0.87
SYNE1-211ENST00000413186 CHMP4BP1P59074 171 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 KIF22Q14807 665 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 STX1AQ16623 288 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 SPICE1Q8N0Z3 855 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 NSUN7Q8NE18 718 aaKnown RBP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 TMEM47Q9BQJ4 181 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 FHDC1Q9C0D6 1143 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 NEDD4P46934 1319 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 hCG_1642624A0A1W2PR95 340 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 CCNT1O60563 726 aaKnown RBP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 MATR3P43243 847 aaKnown RBP eCLIP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 SGMS1Q86VZ5 419 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 HOMER2Q9NSB8 354 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 EXOC1Q9NV70 894 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 USP17L10C9JJH3 530 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 NEMFO60524 1076 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 SEPT2Q15019 361 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 MYSM1Q5VVJ2 828 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 CCDC70Q6NSX1 233 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 FAM163AQ96GL9 167 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 RABGAP1Q9Y3P9 1069 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 USP8P40818 1118 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 TRAPPC10P48553 1259 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 ZSCAN23Q3MJ62 389 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 HS1BP3Q53T59 392 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 DPF2Q92785 391 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 MRIQ9BWK5 157 aa9.62□□□□□ -0.87
SYNE1-211ENST00000413186 ADARB2Q9NS39 739 aaKnown RBP9.62□□□□□ -0.87
SYNE1-211ENST00000413186 BACH1O14867 736 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 MYCLP12524 364 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 RCSD1Q6JBY9 416 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ANKRD35Q8N283 1001 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ENAHQ8N8S7 591 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 SLC44A5Q8NCS7 719 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 MXD3Q9BW11 206 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ZNHIT6Q9NWK9 470 aaKnown RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ANAPC4Q9UJX5 808 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 VWA3AA6NCI4 1184 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 KIF2AO00139 706 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 MYCNP04198 464 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ANGEL2Q5VTE6 544 aaKnown RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 USP17L2Q6R6M4 530 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 C16orf86Q6ZW13 317 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 KCTD1Q719H9 257 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 CDC37L1Q7L3B6 337 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 CMTR1Q8N1G2 835 aaKnown RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 CEP95Q96GE4 821 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 TCHPQ9BT92 498 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 FOXP1Q9H334 677 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 GGA3Q9NZ52 723 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 PKD1L3Q7Z443 1732 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 KCTD2Q14681 263 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 PPFIBP1Q86W92 1011 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 RBM46Q8TBY0 533 aaKnown RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ZHX2Q9Y6X8 837 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ELP1O95163 1332 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 TMTC3Q6ZXV5 915 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 NEK8Q86SG6 692 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 HOXC10Q9NYD6 342 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 DACT1Q9NYF0 836 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 FEM1BQ9UK73 627 aa9.61□□□□□ -0.87
SYNE1-211ENST00000413186 ABT1Q9ULW3 272 aaKnown RBP9.61□□□□□ -0.87
SYNE1-211ENST00000413186 PNMA6FA0A0J9YX94 578 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 SPDYE2BA6NHP3 402 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 SPDYE6P0CI01 402 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 COL18A1P39060 1754 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 CALCRLQ16602 461 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 KLHL10Q6JEL2 608 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 USP25Q9UHP3 1055 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 MTMR6Q9Y217 621 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 PPP2R3BQ9Y5P8 575 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 EEF2P13639 858 aaKnown RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 DACT2Q5SW24 774 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 CYB5R4Q7L1T6 521 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 FAM114A1Q8IWE2 563 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 GPC2Q8N158 579 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 DHX58Q96C10 678 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 RIOK1Q9BRS2 568 aaKnown RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 DEFB129Q9H1M3 183 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 NYAP2Q9P242 653 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 BIN2Q9UBW5 565 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 ADD3Q9UEY8 706 aaKnown RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 RIC1Q4ADV7 1423 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 STK36Q9NRP7 1315 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 ASIC1P78348 528 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 FAM160A1Q05DH4 1040 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 FAM177A1Q8N128 213 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 LY9Q9HBG7 655 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 SH3GLB2Q9NR46 395 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 LRWD1Q9UFC0 647 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 DOT1LQ8TEK3 1739 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 AKR1B1P15121 316 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 GCFC2P16383 781 aaKnown RBP9.6□□□□□ -0.87
SYNE1-211ENST00000413186 RASSF7Q02833 373 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 GRM4Q14833 912 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 ARHGEF16Q5VV41 709 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 FAM83AQ86UY5 434 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 NCAPG2Q86XI2 1143 aa9.6□□□□□ -0.87
SYNE1-211ENST00000413186 GPKOWQ92917 476 aaPredicted RBP eCLIP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms