RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 KRT2P35908 639 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 MRE11P49959 708 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 KCNG4Q8TDN1 519 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 SPZ1Q9BXG8 430 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 VAT1LQ9HCJ6 419 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 TMOD2Q9NZR1 351 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 MYH4Q9Y623 1939 aa21.21■□□□□ 0.99
USP39-201ENST00000323701 EEF2P13639 858 aaKnown RBP21.2■□□□□ 0.98
USP39-201ENST00000323701 ATP2B1P20020 1258 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 RBM26Q5T8P6 1007 aaKnown RBP21.2■□□□□ 0.98
USP39-201ENST00000323701 ADALQ6DHV7 355 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 ENGASEQ8NFI3 743 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 FAM151AQ8WW52 585 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 COL2A1P02458 1487 aaPredicted RBP21.2■□□□□ 0.98
USP39-201ENST00000323701 ARFGEF1Q9Y6D6 1849 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 A0A1B0GVL5 298 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 FZD9O00144 591 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 HOMER1Q86YM7 354 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 FSIP1Q8NA03 581 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 TRIM34Q9BYJ4 488 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 GPCPD1Q9NPB8 672 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 ISY1Q9ULR0 285 aaKnown RBP21.2■□□□□ 0.98
USP39-201ENST00000323701 MRVI1Q9Y6F6 885 aa21.2■□□□□ 0.98
USP39-201ENST00000323701 ASTN2O75129 1339 aaPredicted RBP21.19■□□□□ 0.98
USP39-201ENST00000323701 ZNF541Q9H0D2 1346 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 GMPSP49915 693 aaPredicted RBP21.19■□□□□ 0.98
USP39-201ENST00000323701 TNIP1Q15025 636 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 L1TD1Q5T7N2 865 aaKnown RBP21.19■□□□□ 0.98
USP39-201ENST00000323701 TTBK2Q6IQ55 1244 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 CLIC6Q96NY7 704 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 FHDC1Q9C0D6 1143 aaPredicted RBP21.19■□□□□ 0.98
USP39-201ENST00000323701 PGAP2Q9UHJ9 254 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 NLRP5P59047 1200 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 SAMD7Q7Z3H4 446 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 HEATR3Q7Z4Q2 680 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 PIGSQ96S52 555 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 NUP62CLQ9H1M0 184 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 SPON1Q9HCB6 807 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 GJA3Q9Y6H8 435 aa21.19■□□□□ 0.98
USP39-201ENST00000323701 STXBP3O00186 592 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 GH2P01242 217 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 ZNF280AP59817 542 aaPredicted RBP21.18■□□□□ 0.98
USP39-201ENST00000323701 ABCB5Q2M3G0 1257 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 CKAP2LQ8IYA6 745 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 RASGRP4Q8TDF6 673 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 LZTS2Q9BRK4 669 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 FUCA2Q9BTY2 467 aa21.18■□□□□ 0.98
USP39-201ENST00000323701 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.18■□□□□ 0.98
USP39-201ENST00000323701 NDUFA8P51970 172 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 GRIN1Q05586 938 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 ZNF543Q08ER8 600 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 KCTD1Q719H9 257 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 MIGA2Q7L4E1 593 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 CLSTN2Q9H4D0 955 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 RIOX1Q9H6W3 641 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.17■□□□□ 0.98
USP39-201ENST00000323701 SLC16A2P36021 539 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 RILPL1Q5EBL4 403 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 MICALL2Q8IY33 904 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 RNF214Q8ND24 703 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 KANSL2Q9H9L4 492 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 BARHL2Q9NY43 387 aa21.17■□□□□ 0.98
USP39-201ENST00000323701 A0A1W2PQ27 194 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 A0A1W2PQ64 194 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 A0A1W2PQD8 194 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 FMR1NBQ8N0W7 255 aaPredicted RBP21.16■□□□□ 0.98
USP39-201ENST00000323701 MRPS27Q92552 414 aaKnown RBP21.16■□□□□ 0.98
USP39-201ENST00000323701 DDX19AQ9NUU7 478 aaKnown RBP21.16■□□□□ 0.98
USP39-201ENST00000323701 ICA1Q05084 483 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 FAM160A1Q05DH4 1040 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 ASPRV1Q53RT3 343 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 SHC4Q6S5L8 630 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 TMEM179Q6ZVK1 233 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 MKL1Q969V6 931 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 TSPY26PQ9H489 355 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.16■□□□□ 0.98
USP39-201ENST00000323701 NYAP2Q9P242 653 aa21.16■□□□□ 0.98
USP39-201ENST00000323701 A0A1W2PRG0 241 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 M0R2N6 131 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 RAD21O60216 631 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 PPP6R2O75170 966 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 TBC1D10BQ4KMP7 808 aaPredicted RBP21.15■□□□□ 0.98
USP39-201ENST00000323701 FKBP1CQ5VVH2 108 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 PIK3AP1Q6ZUJ8 805 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 TNMDQ9H2S6 317 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 SH3GLB2Q9NR46 395 aa21.15■□□□□ 0.98
USP39-201ENST00000323701 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.14■□□□□ 0.98
USP39-201ENST00000323701 BLIDQ8IZY5 108 aa21.14■□□□□ 0.98
USP39-201ENST00000323701 HERC5Q9UII4 1024 aaKnown RBP21.14■□□□□ 0.98
USP39-201ENST00000323701 CNOT7Q9UIV1 285 aaKnown RBP21.14■□□□□ 0.98
USP39-201ENST00000323701 SMARCA1P28370 1054 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 SPECC1Q5M775 1068 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 CCDC73Q6ZRK6 1079 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 RBM43Q6ZSC3 357 aaKnown RBP21.14■□□□□ 0.97
USP39-201ENST00000323701 ARHGAP27Q6ZUM4 889 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 FAM83AQ86UY5 434 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 ADGRF4Q8IZF3 695 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 RRP36Q96EU6 259 aaKnown RBP21.14■□□□□ 0.97
USP39-201ENST00000323701 JMJD4Q9H9V9 463 aa21.14■□□□□ 0.97
USP39-201ENST00000323701 PCDHA4Q9UN74 947 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms