RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 KRT39Q6A163 491 aa5.31□□□□□ -1.56
CSMD3-201ENST00000297405 PPP2R5DQ14738 602 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CCDC90BQ9GZT6 254 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TOP2BQ02880 1626 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TRIP12Q14669 1992 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PPIP5K2O43314 1243 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SERPINB6P35237 376 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 RIC3Q7Z5B4 369 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CKAP2LQ8IYA6 745 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 OGFOD1Q8N543 542 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 OLFM1Q99784 485 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 KIAA1107Q9UPP5 1409 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 MSH5O43196 834 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 BCRP11274 1271 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PDE1BQ01064 536 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ADCY2Q08462 1091 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 MSL3Q8N5Y2 521 aaKnown RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PLXNC1O60486 1568 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 WDR46O15213 610 aaKnown RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 IGBP1P78318 339 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CEP19Q96LK0 163 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 RIC8AQ9NPQ8 531 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 BIN2Q9UBW5 565 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 GUCA1BQ9UMX6 200 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 VPS41P49754 854 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 NUTM2GQ5VZR2 741 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TTLL7Q6ZT98 887 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 RILPQ96NA2 401 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ZNF277Q9NRM2 450 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 EMC3Q9P0I2 261 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ERBINQ96RT1 1412 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PHACTR2O75167 634 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 IBSPP21815 317 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 DDX42Q86XP3 938 aaKnown RBP eCLIP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 LRGUKQ96M69 825 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 IL1RAPL2Q9NP60 686 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 WDR81Q562E7 1941 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 POTEMA6NI47 508 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 S100A5P33763 92 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 MATR3P43243 847 aaKnown RBP eCLIP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TRPC1P48995 793 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CAV1Q03135 178 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 RPS6KA2Q15349 733 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 DAB2IPQ5VWQ8 1189 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 POTEHQ6S545 545 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 POTEGQ6S5H5 508 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 NUDCD3Q8IVD9 361 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SCYL3Q8IZE3 742 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TNIP2Q8NFZ5 429 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 KLHL29Q96CT2 875 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SOS2Q07890 1332 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ATP2C2O75185 946 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 F13A1P00488 732 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TFAP4Q01664 338 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 LAMB3Q13751 1172 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TWISTNBQ3B726 338 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PPP4R4Q6NUP7 873 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SECISBP2LQ93073 1101 aaKnown RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TMEM60Q9H2L4 133 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ATAD3AQ9NVI7 634 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CDC42BPBQ9Y5S2 1711 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 BRD8Q9H0E9 1235 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 NCOA1Q15788 1441 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 PASKQ96RG2 1323 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SPEF2Q9C093 1822 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 GOLGA8MH3BSY2 632 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 SH3BP5O60239 455 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 FMNL1O95466 1100 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-201ENST00000297405 MTBPQ96DY7 904 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 CNBD2Q96M20 576 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 TTC25Q96NG3 672 aa5.3□□□□□ -1.56
CSMD3-201ENST00000297405 ABLIM1O14639 778 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TSPAN9O75954 239 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 MX2P20592 715 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 UBXN1Q04323 297 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 POTEAQ6S8J7 498 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RSPH1Q8WYR4 309 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ZFP91Q96JP5 570 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CD209Q9NNX6 404 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SYNJ1O43426 1573 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CACNA1GO43497 2377 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GOLGA8RI6L899 631 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 DAB1O75553 588 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 PLCD1P51178 756 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ZNF75DP51815 510 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 LIN9Q5TKA1 542 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 USP48Q86UV5 1035 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 LRRC8CQ8TDW0 803 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CUL5Q93034 780 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 IFIH1Q9BYX4 1025 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ABCF2Q9UG63 623 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 B4DLN1 442 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CCND1P24385 295 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 MRPL12P52815 198 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 PPWD1Q96BP3 646 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RAD21L1Q9H4I0 556 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 LIMA1Q9UHB6 759 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 WNK2Q9Y3S1 2297 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SPTLC2O15270 562 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms