RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 MYT1Q01538 1121 aa8.45□□□□□ -1.06
CSMD3-201ENST00000297405 PELP1Q8IZL8 1130 aaKnown RBP8.26□□□□□ -1.09
CSMD3-201ENST00000297405 TTBK1Q5TCY1 1321 aaPredicted RBP7.86□□□□□ -1.15
CSMD3-201ENST00000297405 YTHDC1Q96MU7 727 aaKnown RBP7.8□□□□□ -1.16
CSMD3-201ENST00000297405 CCER1Q8TC90 406 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-201ENST00000297405 CENPBP07199 599 aaPredicted RBP7.59□□□□□ -1.19
CSMD3-201ENST00000297405 ZEB1P37275 1124 aaPredicted RBP7.53□□□□□ -1.2
CSMD3-201ENST00000297405 ERICH6Q7L0X2 663 aa7.52□□□□□ -1.21
CSMD3-201ENST00000297405 NEFLP07196 543 aa7.3□□□□□ -1.24
CSMD3-201ENST00000297405 GLIPR1L2Q4G1C9 344 aa7.25□□□□□ -1.25
CSMD3-201ENST00000297405 MYT1LQ9UL68 1186 aa7.25□□□□□ -1.25
CSMD3-201ENST00000297405 DAXXQ9UER7 740 aaPredicted RBP7.17□□□□□ -1.26
CSMD3-201ENST00000297405 CLSPNQ9HAW4 1339 aa7.17□□□□□ -1.26
CSMD3-201ENST00000297405 APLP2Q06481 763 aa7.14□□□□□ -1.27
CSMD3-201ENST00000297405 RTL5Q5HYW3 569 aaPredicted RBP7.13□□□□□ -1.27
CSMD3-201ENST00000297405 RANGAP1P46060 587 aaPredicted RBP7.09□□□□□ -1.27
CSMD3-201ENST00000297405 FAM9AQ8IZU1 332 aaPredicted RBP7.08□□□□□ -1.28
CSMD3-201ENST00000297405 NISCHQ9Y2I1 1504 aa6.95□□□□□ -1.3
CSMD3-201ENST00000297405 ZNF316A6NFI3 1004 aaPredicted RBP6.93□□□□□ -1.3
CSMD3-201ENST00000297405 PCGF6Q9BYE7 350 aa6.93□□□□□ -1.3
CSMD3-201ENST00000297405 NCLP19338 710 aaKnown RBP6.9□□□□□ -1.3
CSMD3-201ENST00000297405 HRCP23327 699 aa6.88□□□□□ -1.31
CSMD3-201ENST00000297405 EHMT2Q96KQ7 1210 aa6.87□□□□□ -1.31
CSMD3-201ENST00000297405 ANP32BQ92688 251 aaKnown RBP6.86□□□□□ -1.31
CSMD3-201ENST00000297405 TRIM26Q12899 539 aaPredicted RBP6.86□□□□□ -1.31
CSMD3-201ENST00000297405 TNNT2P45379 298 aaPredicted RBP6.86□□□□□ -1.31
CSMD3-201ENST00000297405 SUPT5HO00267 1087 aaKnown RBP6.84□□□□□ -1.31
CSMD3-201ENST00000297405 ANP32EQ9BTT0 268 aa6.81□□□□□ -1.32
CSMD3-201ENST00000297405 TRIM44Q96DX7 344 aaPredicted RBP6.8□□□□□ -1.32
CSMD3-201ENST00000297405 DCAF8L2P0C7V8 631 aa6.79□□□□□ -1.32
CSMD3-201ENST00000297405 CDK11AQ9UQ88 783 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-201ENST00000297405 ANP32AP39687 249 aaKnown RBP6.77□□□□□ -1.32
CSMD3-201ENST00000297405 ARID4BQ4LE39 1312 aaPredicted RBP6.74□□□□□ -1.33
CSMD3-201ENST00000297405 KAT6BQ8WYB5 2073 aa6.73□□□□□ -1.33
CSMD3-201ENST00000297405 POLR3GLQ9BT43 218 aa6.72□□□□□ -1.33
CSMD3-201ENST00000297405 DIEXFQ68CQ4 756 aaKnown RBP6.7□□□□□ -1.34
CSMD3-201ENST00000297405 EIF5BO60841 1220 aaKnown RBP6.68□□□□□ -1.34
CSMD3-201ENST00000297405 NEFMP07197 916 aa6.68□□□□□ -1.34
CSMD3-201ENST00000297405 ERICH6BQ5W0A0 696 aa6.67□□□□□ -1.34
CSMD3-201ENST00000297405 ZNF326Q5BKZ1 582 aaKnown RBP6.67□□□□□ -1.34
CSMD3-201ENST00000297405 GON4LQ3T8J9 2241 aa6.67□□□□□ -1.34
CSMD3-201ENST00000297405 PTMSP20962 102 aa6.66□□□□□ -1.34
CSMD3-201ENST00000297405 CDK11BP21127 795 aaKnown RBP6.64□□□□□ -1.35
CSMD3-201ENST00000297405 UPF2Q9HAU5 1272 aaKnown RBP6.64□□□□□ -1.35
CSMD3-201ENST00000297405 ZBTB47Q9UFB7 747 aaPredicted RBP6.6□□□□□ -1.35
CSMD3-201ENST00000297405 ACIN1Q9UKV3 1341 aaKnown RBP6.6□□□□□ -1.35
CSMD3-201ENST00000297405 TRIM41Q8WV44 630 aa6.59□□□□□ -1.35
CSMD3-201ENST00000297405 GTF3C3Q9Y5Q9 886 aa6.59□□□□□ -1.36
CSMD3-201ENST00000297405 CCDC180Q9P1Z9 1646 aa6.58□□□□□ -1.36
CSMD3-201ENST00000297405 SLC24A1O60721 1099 aa6.57□□□□□ -1.36
CSMD3-201ENST00000297405 NEUROD1Q13562 356 aa6.56□□□□□ -1.36
CSMD3-201ENST00000297405 DDRGK1Q96HY6 314 aa6.54□□□□□ -1.36
CSMD3-201ENST00000297405 ANP32CO43423 234 aa6.53□□□□□ -1.36
CSMD3-201ENST00000297405 USP35Q9P2H5 1018 aa6.52□□□□□ -1.37
CSMD3-201ENST00000297405 HSP90AA1P07900 732 aaKnown RBP6.51□□□□□ -1.37
CSMD3-201ENST00000297405 BECN1Q14457 450 aa6.51□□□□□ -1.37
CSMD3-201ENST00000297405 LAS1LQ9Y4W2 734 aaKnown RBP6.51□□□□□ -1.37
CSMD3-201ENST00000297405 DCAF1Q9Y4B6 1507 aa6.5□□□□□ -1.37
CSMD3-201ENST00000297405 UBTFP17480 764 aaKnown RBP6.49□□□□□ -1.37
CSMD3-201ENST00000297405 CALRP27797 417 aaKnown RBP6.49□□□□□ -1.37
CSMD3-201ENST00000297405 GOLGA6L22H0YM25 854 aa6.49□□□□□ -1.37
CSMD3-201ENST00000297405 PPM1GO15355 546 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-201ENST00000297405 MYO10Q9HD67 2058 aa6.48□□□□□ -1.37
CSMD3-201ENST00000297405 CHAF1AQ13111 956 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-201ENST00000297405 NRDCO43847 1150 aa6.47□□□□□ -1.37
CSMD3-201ENST00000297405 SHROOM4Q9ULL8 1493 aa6.46□□□□□ -1.38
CSMD3-201ENST00000297405 L1TD1Q5T7N2 865 aaKnown RBP6.46□□□□□ -1.38
CSMD3-201ENST00000297405 A0A0U1RQG5 324 aaPredicted RBP6.45□□□□□ -1.38
CSMD3-201ENST00000297405 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-201ENST00000297405 MYH10P35580 1976 aa6.42□□□□□ -1.38
CSMD3-201ENST00000297405 GOLGA6L6A8MZA4 724 aa6.42□□□□□ -1.38
CSMD3-201ENST00000297405 HMGB1P09429 215 aaKnown RBP6.41□□□□□ -1.38
CSMD3-201ENST00000297405 RSPH6AQ9H0K4 717 aa6.41□□□□□ -1.38
CSMD3-201ENST00000297405 PNNQ9H307 717 aaKnown RBP6.41□□□□□ -1.38
CSMD3-201ENST00000297405 BCL11AQ9H165 835 aa6.4□□□□□ -1.38
CSMD3-201ENST00000297405 CNGB1Q14028 1251 aaPredicted RBP6.4□□□□□ -1.39
CSMD3-201ENST00000297405 CFAP44Q96MT7 982 aa6.4□□□□□ -1.39
CSMD3-201ENST00000297405 CANXP27824 592 aaKnown RBP6.39□□□□□ -1.39
CSMD3-201ENST00000297405 MTERF4Q7Z6M4 381 aaKnown RBP6.39□□□□□ -1.39
CSMD3-201ENST00000297405 GOLGA6L3A6NEY3 463 aa6.36□□□□□ -1.39
CSMD3-201ENST00000297405 GOLGA4Q13439 2230 aaKnown RBP6.36□□□□□ -1.39
CSMD3-201ENST00000297405 TNNT3P45378 269 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-201ENST00000297405 MAP7D2Q96T17 732 aa6.34□□□□□ -1.4
CSMD3-201ENST00000297405 MSNP26038 577 aaKnown RBP6.33□□□□□ -1.4
CSMD3-201ENST00000297405 ZRSR1Q15695 479 aaKnown RBP6.33□□□□□ -1.4
CSMD3-201ENST00000297405 NAP1L5Q96NT1 182 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-201ENST00000297405 SETQ01105 290 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-201ENST00000297405 CCDC136Q96JN2 1154 aa6.33□□□□□ -1.4
CSMD3-201ENST00000297405 DNTTIP2Q5QJE6 756 aaKnown RBP6.33□□□□□ -1.4
CSMD3-201ENST00000297405 CHMP4BQ9H444 224 aaKnown RBP6.32□□□□□ -1.4
CSMD3-201ENST00000297405 TAF3Q5VWG9 929 aa6.31□□□□□ -1.4
CSMD3-201ENST00000297405 GOLGA6L1Q8N7Z2 621 aa6.31□□□□□ -1.4
CSMD3-201ENST00000297405 PTMAP06454 111 aaKnown RBP6.3□□□□□ -1.4
CSMD3-201ENST00000297405 ATP1B4Q9UN42 357 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-201ENST00000297405 MYH9P35579 1960 aaKnown RBP6.29□□□□□ -1.4
CSMD3-201ENST00000297405 CROCCQ5TZA2 2017 aa6.29□□□□□ -1.4
CSMD3-201ENST00000297405 GOLGA6L4A6NEF3 574 aa6.29□□□□□ -1.4
CSMD3-201ENST00000297405 HSP90AA2PQ14568 343 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-201ENST00000297405 NOP58Q9Y2X3 529 aaKnown RBP6.29□□□□□ -1.4
CSMD3-201ENST00000297405 NBR1Q14596 966 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms