RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	SGF73	P53165	657 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	DCP2	P53550	970 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	FOL1	P53848	824 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	SMA1	Q02651	245 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	YMR254C	Q04838	102 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	ARP9	Q05123	467 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	HIM1	Q06674	414 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	PSR2	Q07949	397 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	EDE1	P34216	1381 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	ADE3	P07245	946 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	RAP1	P11938	827 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	MRC1	P25588	1096 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	MSH1	P25846	959 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	RPN2	P32565	945 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	SOF1	P33750	489 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	RIM2	P38127	377 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	APM3	P38153	483 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	AVT5	P38176	459 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	RFC1	P38630	861 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	YEL068C	P39977	110 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	YJL068C	P40363	299 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	CDC1	P40986	491 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	TAM41	P53230	385 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	NNF2	P53253	936 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	TEP1	P53916	434 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	MAK10	Q02197	733 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	CTL1	Q03220	320 aa	Known RBP	0.66	□□□□□ -2.3
NIP1	YMR309C	ARP10	Q04549	284 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	GTB1	Q04924	702 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	STP3	Q05937	343 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	YLR455W	Q06188	304 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	SWA2	Q06677	668 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	BAG7	Q12128	409 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	BSC1	Q12140	328 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	CSR2	Q12734	1121 aa		0.66	□□□□□ -2.3
NIP1	YMR309C	BAR1	P12630	587 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	CBS2	P14905	389 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	SIR1	P21691	654 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	SWI4	P25302	1093 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	ARP2	P32381	391 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	YKL133C	P36066	463 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	MRPL36	P36531	177 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	YPK3	P38070	525 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	UBP13	P38187	747 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	ENP1	P38333	483 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	YHR218W	P38899	603 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	KRE9	P39005	276 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	STT3	P39007	718 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	MSY1	P48527	492 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	DOS2	P54858	310 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	ATG23	Q06671	453 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	IWR1	Q07532	353 aa	Predicted RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	SWT1	Q12104	458 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	YOL114C	Q12322	202 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	MPD2	Q99316	277 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	ATP2	P00830	511 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	SSB1	P11484	613 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	SST2	P11972	698 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	SPO16	P17122	198 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	MCM3	P24279	971 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	CLB4	P24871	460 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	LDB16	P25587	256 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	SWH1	P35845	1188 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	MIC60	P36112	540 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	FSH1	P38777	243 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	SSB2	P40150	613 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	YJR061W	P40355	935 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	RTS2	P40962	232 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	IAH1	P41734	238 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	ERR3	P42222	437 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	PUS4	P48567	403 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	YGL082W	P53155	381 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	CEG1	Q01159	459 aa	Predicted RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	EKI1	Q03764	534 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	RSF1	Q05043	376 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	CRN1	Q06440	651 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	CSR1	Q06705	408 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	YDL218W	Q07629	317 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	RDR1	Q08904	546 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	PPT2	Q12036	173 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	DAP1	Q12091	152 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	SUL2	Q12325	893 aa		0.65	□□□□□ -2.31
NIP1	YMR309C	TMA7	Q3E764	64 aa	Known RBP	0.65	□□□□□ -2.31
NIP1	YMR309C	TPK1	P06244	397 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	PGI1	P12709	554 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	PHO81	P17442	1178 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	GLN3	P18494	730 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	TKL1	P23254	680 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	LRE1	P25579	583 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	CDC15	P27636	974 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	BUD14	P27637	709 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	MCM4	P30665	933 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	RAD16	P31244	790 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	SAC1	P32368	623 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	TFC3	P34111	1160 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	YNK1	P36010	153 aa	Known RBP	0.64	□□□□□ -2.31
NIP1	YMR309C	PAF1	P38351	445 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	PHM8	P40025	321 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	PSF2	P40359	213 aa		0.64	□□□□□ -2.31
NIP1	YMR309C	YIR014W	P40570	242 aa		0.64	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms