RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	MMS21	P38632	267 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	TDA11	P38854	504 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	CCT6	P39079	546 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	OAF1	P39720	1047 aa	Predicted RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	KTR7	P40504	517 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	INA22	P40576	216 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	DLD2	P46681	530 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	COQ6	P53318	479 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	ELP3	Q02908	557 aa	Known RBP	4.92	□□□□□ -1.62
NUP116	YMR047C	YPR022C	Q12139	1133 aa		4.92	□□□□□ -1.62
NUP116	YMR047C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
NUP116	YMR047C	RED1	P14291	827 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	CKI1	P20485	582 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	PDB1	P32473	366 aa	Known RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	RPC34	P32910	317 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	SQT1	P35184	431 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	MRPL10	P36520	322 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	MNN2	P38069	597 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	GIP1	P38229	639 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	ECM2	P38241	364 aa	Known RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	CAJ1	P39101	391 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	ARG2	P40360	574 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	YJL070C	P40361	888 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	MDV1	P47025	714 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	MDE1	P47095	244 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	NMA2	P53204	395 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	VPS9	P54787	451 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	ORC3	P54790	616 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	YPL109C	Q02981	657 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	USA1	Q03714	838 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	ARP9	Q05123	467 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	RTC5	Q12108	567 aa	Known RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	MTF2	P10849	440 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	TRX2	P22803	104 aa	Known RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	ATP3	P38077	311 aa	Known RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	AMN1	P38285	549 aa	Predicted RBP	4.91	□□□□□ -1.62
NUP116	YMR047C	RCK2	P38623	610 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	MBP1	P39678	833 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	GDH3	P39708	457 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	CWC24	P53769	259 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	NGL3	Q03210	505 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	TMA16	Q08687	178 aa		4.91	□□□□□ -1.62
NUP116	YMR047C	CAN1	P04817	590 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	HSP60	P19882	572 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	NPP1	P25353	742 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YIH1	P25637	258 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YJU3	P28321	313 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	SLX5	P32828	619 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	ALG3	P38179	458 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	IFA38	P38286	347 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	AIM18	P38884	321 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YIL077C	P40508	320 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	RNH70	P53331	553 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YKR005C	Q02203	525 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YDR131C	Q03899	556 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	HMO1	Q03973	246 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	NTG2	Q08214	380 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	THI20	Q08224	551 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YPL216W	Q08964	1102 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	ARP7	Q12406	477 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	MEI4	P29467	408 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	SMI1	P32566	505 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	TFC3	P34111	1160 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	SHM1	P37292	490 aa	Predicted RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	MAP2	P38174	421 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	GCN20	P43535	752 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	MNN11	P46985	422 aa	Known RBP	4.9	□□□□□ -1.62
NUP116	YMR047C	OKP1	P53298	406 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YOR387C	Q08910	206 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	YOR223W	Q12015	292 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	FRT1	Q99332	602 aa		4.9	□□□□□ -1.62
NUP116	YMR047C	GPA2	P10823	449 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	PMR1	P13586	950 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	TYR1	P20049	452 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	YBR056W	P38081	501 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	QNS1	P38795	714 aa	Known RBP	4.9	□□□□□ -1.63
NUP116	YMR047C	MTW1	P39731	289 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	IST3	P40565	148 aa	Predicted RBP	4.9	□□□□□ -1.63
NUP116	YMR047C	BST1	P43571	1029 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	PRP24	P49960	444 aa	Known RBP	4.9	□□□□□ -1.63
NUP116	YMR047C	MTO1	P53070	669 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	COG6	P53959	839 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	YPL113C	Q02961	396 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	YMR114C	Q04471	368 aa	Known RBP	4.9	□□□□□ -1.63
NUP116	YMR047C	POB3	Q04636	552 aa	Known RBP	4.9	□□□□□ -1.63
NUP116	YMR047C	YLR287C	Q05881	355 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	YDL129W	Q07555	291 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	IZH4	Q99393	312 aa		4.9	□□□□□ -1.63
NUP116	YMR047C	KIN2	P13186	1147 aa	Known RBP	4.89	□□□□□ -1.63
NUP116	YMR047C	SMC1	P32908	1225 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	PMT1	P33775	817 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	DCW1	P36091	449 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	BUD13	P46947	266 aa	Predicted RBP	4.89	□□□□□ -1.63
NUP116	YMR047C	GTR1	Q00582	310 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
NUP116	YMR047C	COX20	Q04935	205 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	OMS1	Q06668	471 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	ALR1	Q08269	859 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	TRE2	Q08693	809 aa		4.89	□□□□□ -1.63
NUP116	YMR047C	PGC1	Q08959	321 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms