RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	MTG2	P38860	518 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	DUO1	P53168	247 aa	Known RBP	5.17	□□□□□ -1.58
CAF16	YFL028C	YNL050C	P53952	270 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	YSA1	Q01976	231 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	YML119W	Q03208	357 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	RCO1	Q04779	684 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	SWT1	Q12104	458 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	HUA2	Q12134	243 aa		5.17	□□□□□ -1.58
CAF16	YFL028C	YJL206C	P39529	758 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	ARC1	P46672	376 aa	Known RBP	5.16	□□□□□ -1.58
CAF16	YFL028C	VPS4	P52917	437 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	IMO32	P53219	342 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	YGR079W	P53249	370 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	RMT2	Q03305	412 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	RAD30	Q04049	632 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	YKU80	Q04437	629 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	TDA9	Q04545	1251 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	YDL073W	Q07454	984 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	RTT109	Q07794	436 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	ALE1	Q08548	619 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
CAF16	YFL028C	NUS1	Q12063	375 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	MDM20	Q12387	796 aa	Known RBP	5.16	□□□□□ -1.58
CAF16	YFL028C	YBR255C-A	Q3E776	120 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	VCX1	Q99385	411 aa		5.16	□□□□□ -1.58
CAF16	YFL028C	UTP10	P42945	1769 aa	Known RBP	5.16	□□□□□ -1.58
CAF16	YFL028C	AMD2	P22580	549 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	PRE8	P23639	250 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	SGF29	P25554	259 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	LRE1	P25579	583 aa	Known RBP	5.15	□□□□□ -1.59
CAF16	YFL028C	SIP1	P32578	815 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	ALY1	P36117	915 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	YPT10	P38146	199 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	TDP1	P38319	544 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	BUD16	P39988	312 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	SUN4	P53616	420 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	HEF3	P53978	1044 aa	Known RBP	5.15	□□□□□ -1.59
CAF16	YFL028C	UBP16	Q02863	499 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	ESC8	Q08119	714 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	PSK2	Q08217	1101 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	TAH18	Q12181	623 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	YBR126W-A	Q8TGU7	68 aa		5.15	□□□□□ -1.59
CAF16	YFL028C	SUI3	P09064	285 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	RPL19A	P0CX82	189 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	RPL19B	P0CX83	189 aa	Predicted RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	RNR3	P21672	869 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	RFA2	P26754	273 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	BDH2	P39713	417 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	FUN12	P39730	1002 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	MRPL19	P53875	158 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	SPC19	Q03954	165 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	MFB1	Q04922	465 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	GTB1	Q04924	702 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	YML053C	Q04978	212 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	HBT1	Q07653	1046 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	YDL242W	Q07746	117 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	BUG1	Q12191	341 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	PRS5	Q12265	496 aa	Known RBP	5.14	□□□□□ -1.59
CAF16	YFL028C	ERP4	Q12450	207 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	LYS2	P07702	1392 aa		5.14	□□□□□ -1.59
CAF16	YFL028C	AAC1	P04710	309 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	RPP0	P05317	312 aa	Known RBP	5.13	□□□□□ -1.59
CAF16	YFL028C	SEC53	P07283	254 aa	Known RBP	5.13	□□□□□ -1.59
CAF16	YFL028C	YML003W	P0CF16	290 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	SUI2	P20459	304 aa	Known RBP	5.13	□□□□□ -1.59
CAF16	YFL028C	PGS1	P25578	521 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	SAC6	P32599	642 aa	Known RBP	5.13	□□□□□ -1.59
CAF16	YFL028C	GDA1	P32621	518 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	YBL029W	P38201	376 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	YBR225W	P38321	900 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	MAM1	P40065	302 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	YNL092W	P53934	400 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	FCP1	Q03254	732 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	ATG23	Q06671	453 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	CRT10	Q08226	957 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	ACF2	Q12168	779 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	ZPS1	Q12512	249 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	YOR019W	Q99248	730 aa		5.13	□□□□□ -1.59
CAF16	YFL028C	COX1	P00401	534 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	OLE1	P21147	510 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	YCK1	P23291	538 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	TFC3	P34111	1160 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	GEX2	P36173	615 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	NOP4	P37838	685 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	MIT1	P40002	666 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	UBP7	P40453	1071 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	CCT7	P42943	550 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	VTC2	P43585	828 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	UBX6	P47049	396 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	NPA3	P47122	385 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	MSE1	P48525	536 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	STB4	P50104	949 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	COQ6	P53318	479 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	ARE2	P53629	642 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	ARP9	Q05123	467 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	RIX7	Q07844	837 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	LYS21	Q12122	440 aa	Known RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	HSH49	Q99181	213 aa	Predicted RBP	5.12	□□□□□ -1.59
CAF16	YFL028C	AI5_ALPHA	Q9ZZX1	630 aa		5.12	□□□□□ -1.59
CAF16	YFL028C	WHI2	P12611	486 aa		5.11	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms