RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 EEF2P13639 858 aaKnown RBP33.59■■■□□ 2.97
LIG3-208ENST00000586407 SPDYE16A6NNV3 312 aaPredicted RBP33.58■■■□□ 2.97
LIG3-208ENST00000586407 PLEKHM2Q8IWE5 1019 aa33.58■■■□□ 2.97
LIG3-208ENST00000586407 TANGO6Q9C0B7 1094 aa33.58■■■□□ 2.97
LIG3-208ENST00000586407 MKNK2Q9HBH9 465 aa33.58■■■□□ 2.97
LIG3-208ENST00000586407 GJD2Q9UKL4 321 aa33.58■■■□□ 2.97
LIG3-208ENST00000586407 TMX2Q9Y320 296 aa33.58■■■□□ 2.97
LIG3-208ENST00000586407 TRIM6-TRIM34B2RNG4 842 aa33.57■■■□□ 2.96
LIG3-208ENST00000586407 CCL5P13501 91 aa33.57■■■□□ 2.96
LIG3-208ENST00000586407 IRF5Q13568 498 aa33.57■■■□□ 2.96
LIG3-208ENST00000586407 FAM227BQ96M60 508 aa33.57■■■□□ 2.96
LIG3-208ENST00000586407 A0A0D9SFI3 127 aa33.56■■■□□ 2.96
LIG3-208ENST00000586407 VPS53Q5VIR6 699 aa33.56■■■□□ 2.96
LIG3-208ENST00000586407 GTF3C2Q8WUA4 911 aaPredicted RBP33.56■■■□□ 2.96
LIG3-208ENST00000586407 NACAP1Q9BZK3 213 aa33.56■■■□□ 2.96
LIG3-208ENST00000586407 NAPBQ9H115 298 aa33.56■■■□□ 2.96
LIG3-208ENST00000586407 BTBD7Q9P203 1132 aa33.56■■■□□ 2.96
LIG3-208ENST00000586407 MYH4Q9Y623 1939 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 INHAP05111 366 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 RILPL2Q969X0 211 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 UNC93B1Q9H1C4 597 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 VCPKMTQ9H867 229 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 KANSL2Q9H9L4 492 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 RABGAP1Q9Y3P9 1069 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 A0A0G2JMZ2 1700 aa33.55■■■□□ 2.96
LIG3-208ENST00000586407 UBXN2AP68543 259 aa33.54■■■□□ 2.96
LIG3-208ENST00000586407 SAMD1Q6SPF0 538 aaPredicted RBP33.54■■■□□ 2.96
LIG3-208ENST00000586407 NMIQ13287 307 aaPredicted RBP33.53■■■□□ 2.96
LIG3-208ENST00000586407 PXYLP1Q8TE99 480 aa33.53■■■□□ 2.96
LIG3-208ENST00000586407 SHISA4Q96DD7 197 aa33.53■■■□□ 2.96
LIG3-208ENST00000586407 RNF208Q9H0X6 261 aa33.53■■■□□ 2.96
LIG3-208ENST00000586407 SH2D4AQ9H788 454 aa33.53■■■□□ 2.96
LIG3-208ENST00000586407 RAD21O60216 631 aa33.52■■■□□ 2.96
LIG3-208ENST00000586407 CYP2B6P20813 491 aa33.52■■■□□ 2.96
LIG3-208ENST00000586407 PPARAQ07869 468 aa33.52■■■□□ 2.96
LIG3-208ENST00000586407 GPR142Q7Z601 462 aa33.52■■■□□ 2.96
LIG3-208ENST00000586407 CCAR1Q8IX12 1150 aaKnown RBP33.52■■■□□ 2.96
LIG3-208ENST00000586407 COL11A1P12107 1806 aaPredicted RBP33.51■■■□□ 2.96
LIG3-208ENST00000586407 MAPK4P31152 587 aa33.51■■■□□ 2.95
LIG3-208ENST00000586407 TRIM32Q13049 653 aa33.51■■■□□ 2.95
LIG3-208ENST00000586407 LBX2Q6XYB7 198 aa33.51■■■□□ 2.95
LIG3-208ENST00000586407 LPAR1Q92633 364 aa33.51■■■□□ 2.95
LIG3-208ENST00000586407 COG2Q14746 738 aa33.5■■■□□ 2.95
LIG3-208ENST00000586407 WDR78Q5VTH9 848 aa33.5■■■□□ 2.95
LIG3-208ENST00000586407 HELLSQ9NRZ9 838 aa33.5■■■□□ 2.95
LIG3-208ENST00000586407 FLOT1O75955 427 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 CTDSPL2Q05D32 466 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 PLEKHH3Q7Z736 793 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 ZNF589Q86UQ0 364 aaPredicted RBP33.49■■■□□ 2.95
LIG3-208ENST00000586407 ATG4CQ96DT6 458 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 CWC22Q9HCG8 908 aaKnown RBP33.49■■■□□ 2.95
LIG3-208ENST00000586407 INCENPQ9NQS7 918 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 BRCA2P51587 3418 aa33.49■■■□□ 2.95
LIG3-208ENST00000586407 FAM47AQ5JRC9 791 aa33.48■■■□□ 2.95
LIG3-208ENST00000586407 ZNF444Q8N0Y2 327 aaPredicted RBP33.48■■■□□ 2.95
LIG3-208ENST00000586407 NUDT12Q9BQG2 462 aa33.48■■■□□ 2.95
LIG3-208ENST00000586407 OSBPL3Q9H4L5 887 aa33.48■■■□□ 2.95
LIG3-208ENST00000586407 FBXO28Q9NVF7 368 aa33.48■■■□□ 2.95
LIG3-208ENST00000586407 IGKV6D-41A0A0C4DH26 115 aa33.47■■■□□ 2.95
LIG3-208ENST00000586407 WDR46O15213 610 aaKnown RBP33.47■■■□□ 2.95
LIG3-208ENST00000586407 PDE4AP27815 886 aa33.47■■■□□ 2.95
LIG3-208ENST00000586407 DSG3P32926 999 aa33.47■■■□□ 2.95
LIG3-208ENST00000586407 TRIB2Q92519 343 aa33.47■■■□□ 2.95
LIG3-208ENST00000586407 NUP88Q99567 741 aaPredicted RBP33.47■■■□□ 2.95
LIG3-208ENST00000586407 TACC3Q9Y6A5 838 aa33.47■■■□□ 2.95
LIG3-208ENST00000586407 GJB1P08034 283 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 CCNA1P78396 465 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 MCMDC2Q4G0Z9 681 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 MORN1Q5T089 497 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 FAM83BQ5T0W9 1011 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 GOPCQ9HD26 462 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 HOXC10Q9NYD6 342 aa33.46■■■□□ 2.95
LIG3-208ENST00000586407 HMGCRP04035 888 aa33.45■■■□□ 2.95
LIG3-208ENST00000586407 SOCS4Q8WXH5 440 aa33.45■■■□□ 2.95
LIG3-208ENST00000586407 USP6NLQ92738 828 aa33.45■■■□□ 2.95
LIG3-208ENST00000586407 CEP95Q96GE4 821 aa33.45■■■□□ 2.95
LIG3-208ENST00000586407 CLIP2Q9UDT6 1046 aa33.45■■■□□ 2.95
LIG3-208ENST00000586407 SDSP20132 328 aa33.44■■■□□ 2.94
LIG3-208ENST00000586407 PDE4BQ07343 736 aa33.44■■■□□ 2.94
LIG3-208ENST00000586407 CCL14Q16627 93 aa33.44■■■□□ 2.94
LIG3-208ENST00000586407 U2AF1L4Q8WU68 220 aaKnown RBP33.44■■■□□ 2.94
LIG3-208ENST00000586407 MOV10L1Q9BXT6 1211 aaKnown RBP33.44■■■□□ 2.94
LIG3-208ENST00000586407 ZNF287Q9HBT7 754 aa33.44■■■□□ 2.94
LIG3-208ENST00000586407 NYAP2Q9P242 653 aa33.44■■■□□ 2.94
LIG3-208ENST00000586407 SLC3A2P08195 630 aaKnown RBP33.43■■■□□ 2.94
LIG3-208ENST00000586407 GJA8P48165 433 aa33.43■■■□□ 2.94
LIG3-208ENST00000586407 PLS1Q14651 629 aa33.43■■■□□ 2.94
LIG3-208ENST00000586407 DDX52Q9Y2R4 599 aaKnown RBP eCLIP33.43■■■□□ 2.94
LIG3-208ENST00000586407 TSPY3P0CV98 308 aa33.42■■■□□ 2.94
LIG3-208ENST00000586407 TSPY8P0CW00 308 aa33.42■■■□□ 2.94
LIG3-208ENST00000586407 TFAP4Q01664 338 aa33.42■■■□□ 2.94
LIG3-208ENST00000586407 LRRC47Q8N1G4 583 aaKnown RBP33.42■■■□□ 2.94
LIG3-208ENST00000586407 DEFB118Q96PH6 123 aa33.42■■■□□ 2.94
LIG3-208ENST00000586407 SPATC1LQ9H0A9 340 aa33.42■■■□□ 2.94
LIG3-208ENST00000586407 NDUFB10O96000 172 aa33.41■■■□□ 2.94
LIG3-208ENST00000586407 RGS2P41220 211 aa33.41■■■□□ 2.94
LIG3-208ENST00000586407 NEDD1Q8NHV4 660 aa33.41■■■□□ 2.94
LIG3-208ENST00000586407 MTMR4Q9NYA4 1195 aa33.41■■■□□ 2.94
LIG3-208ENST00000586407 CCDC171Q6TFL3 1326 aa33.41■■■□□ 2.94
LIG3-208ENST00000586407 PLIN4Q96Q06 1357 aa33.41■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms