RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PALM3A6NDB9 673 aaPredicted RBP16.31■□□□□ 0.2
LIG3-205ENST00000585941 C21orf2O43822 256 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 GALNT17Q6IS24 598 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 ILDR2Q71H61 639 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 KIAA0825Q8IV33 1275 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 TIGD1Q96MW7 591 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 DDX4Q9NQI0 724 aaKnown RBP16.31■□□□□ 0.2
LIG3-205ENST00000585941 MAD2L2Q9UI95 211 aa16.31■□□□□ 0.2
LIG3-205ENST00000585941 CKAP2LQ8IYA6 745 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 KRI1Q8N9T8 703 aaKnown RBP16.3■□□□□ 0.2
LIG3-205ENST00000585941 FAM200AQ8TCP9 573 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 CCDC17Q96LX7 622 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 SPZ1Q9BXG8 430 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 KCNQ5Q9NR82 932 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 BAZ2BQ9UIF8 2168 aaKnown RBP16.3■□□□□ 0.2
LIG3-205ENST00000585941 A0A1B0GVL5 298 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 TRIM75PA6NK02 468 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 PARP1P09874 1014 aaKnown RBP16.3■□□□□ 0.2
LIG3-205ENST00000585941 TOB1P50616 345 aaPredicted RBP16.3■□□□□ 0.2
LIG3-205ENST00000585941 NDUFA8P51970 172 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 NLRP5P59047 1200 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 NR5A1Q13285 461 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 HS1BP3Q53T59 392 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 CCDC148Q8NFR7 591 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 CEP95Q96GE4 821 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 SDF4Q9BRK5 362 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 PDGFDQ9GZP0 370 aaPredicted RBP16.3■□□□□ 0.2
LIG3-205ENST00000585941 MTMR4Q9NYA4 1195 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 MRVI1Q9Y6F6 885 aa16.3■□□□□ 0.2
LIG3-205ENST00000585941 MARCKSP29966 332 aaPredicted RBP16.29■□□□□ 0.2
LIG3-205ENST00000585941 TRAPPC10P48553 1259 aa16.29■□□□□ 0.2
LIG3-205ENST00000585941 RBM5P52756 815 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIG3-205ENST00000585941 RESP18Q5W5W9 173 aa16.29■□□□□ 0.2
LIG3-205ENST00000585941 ZNF579Q8NAF0 562 aaKnown RBP16.29■□□□□ 0.2
LIG3-205ENST00000585941 OXER1Q8TDS5 423 aa16.29■□□□□ 0.2
LIG3-205ENST00000585941 CABP5Q9NP86 173 aa16.29■□□□□ 0.2
LIG3-205ENST00000585941 IGKV6D-41A0A0C4DH26 115 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 hCG_1642624A0A1W2PR95 340 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 KLRF2D3W0D1 207 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 PFKFB1P16118 471 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 DPEP1P16444 411 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 TGFB2P61812 414 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 STX1AQ16623 288 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 STAG2Q8N3U4 1231 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 CCDC12Q8WUD4 166 aaPredicted RBP16.28■□□□□ 0.2
LIG3-205ENST00000585941 TNFRSF25Q93038 417 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 PI4KBQ9UBF8 816 aa16.28■□□□□ 0.2
LIG3-205ENST00000585941 GREB1LQ9C091 1923 aaPredicted RBP16.28■□□□□ 0.2
LIG3-205ENST00000585941 COL2A1P02458 1487 aaPredicted RBP16.28■□□□□ 0.2
LIG3-205ENST00000585941 ZNF202O95125 648 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 TTLL1O95922 423 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 PTPREP23469 700 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 SYKP43405 635 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 ASPRV1Q53RT3 343 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 SHISA4Q96DD7 197 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 HPSEQ9Y251 543 aa16.27■□□□□ 0.2
LIG3-205ENST00000585941 ENTPD3O75355 529 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 KCNA3P22001 575 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 SHMT1P34896 483 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 NPY5RQ15761 445 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 ANO6Q4KMQ2 910 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 FOXP4Q8IVH2 680 aaPredicted RBP16.27■□□□□ 0.19
LIG3-205ENST00000585941 ANO10Q9NW15 660 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 FAM13BQ9NYF5 915 aa16.27■□□□□ 0.19
LIG3-205ENST00000585941 SRPRBQ9Y5M8 271 aaKnown RBP16.27■□□□□ 0.19
LIG3-205ENST00000585941 YDJCA8MPS7 323 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 hCG_1984214I3L0E3 225 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 AKR1B1P15121 316 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 POLD1P28340 1107 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 NFIAQ12857 509 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 ZRSR1Q15695 479 aaKnown RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 RSBN1LQ6PCB5 846 aaPredicted RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 SHC4Q6S5L8 630 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 ELOA2Q8IYF1 753 aaPredicted RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 FAM43AQ8N2R8 423 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 LARGE2Q8N3Y3 721 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 ZNF713Q8N859 430 aaPredicted RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 DAGLBQ8NCG7 672 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 FERMT2Q96AC1 680 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 RRP36Q96EU6 259 aaKnown RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 BARHL2Q9NY43 387 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 PIM2Q9P1W9 311 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 FBXO2Q9UK22 296 aaPredicted RBP16.26■□□□□ 0.19
LIG3-205ENST00000585941 HDAC9Q9UKV0 1011 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 PCDHA4Q9UN74 947 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 PCDHB6Q9Y5E3 794 aa16.26■□□□□ 0.19
LIG3-205ENST00000585941 BLIDQ8IZY5 108 aa16.25■□□□□ 0.19
LIG3-205ENST00000585941 TRIM34Q9BYJ4 488 aa16.25■□□□□ 0.19
LIG3-205ENST00000585941 FAM198AQ9UFP1 575 aa16.25■□□□□ 0.19
LIG3-205ENST00000585941 HOOK1Q9UJC3 728 aaKnown RBP16.25■□□□□ 0.19
LIG3-205ENST00000585941 MYH4Q9Y623 1939 aa16.25■□□□□ 0.19
LIG3-205ENST00000585941 ATRNL1Q5VV63 1379 aa16.25■□□□□ 0.19
LIG3-205ENST00000585941 CYTH3O43739 400 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 VIL1P09327 827 aaKnown RBP16.24■□□□□ 0.19
LIG3-205ENST00000585941 ZNF165P49910 485 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 CFAP100Q494V2 611 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 NAT10Q9H0A0 1025 aaKnown RBP16.24■□□□□ 0.19
LIG3-205ENST00000585941 TMOD2Q9NZR1 351 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 KIAA1468Q9P260 1216 aa16.24■□□□□ 0.19
LIG3-205ENST00000585941 SEC63Q9UGP8 760 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms