RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PLEKHM2Q8IWE5 1019 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 CCAR1Q8IX12 1150 aaKnown RBP18.7■□□□□ 0.58
VPS39-203ENST00000561797 SPICE1Q8N0Z3 855 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 NAPBQ9H115 298 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 SH2D4AQ9H788 454 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 KANSL2Q9H9L4 492 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 TMX2Q9Y320 296 aa18.7■□□□□ 0.58
VPS39-203ENST00000561797 ZNFX1Q9P2E3 1918 aaKnown RBP18.7■□□□□ 0.58
VPS39-203ENST00000561797 RAD21O60216 631 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 PRDM1O75626 825 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 UBXN2AP68543 259 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 IRF5Q13568 498 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 PORCNQ9H237 461 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 RABGAP1Q9Y3P9 1069 aa18.69■□□□□ 0.58
VPS39-203ENST00000561797 TNRC18O15417 2968 aaPredicted RBP18.69■□□□□ 0.58
VPS39-203ENST00000561797 SPDYE16A6NNV3 312 aaPredicted RBP18.68■□□□□ 0.58
VPS39-203ENST00000561797 CNMDO75829 334 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 CCL5P13501 91 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 COG2Q14746 738 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 SAMD1Q6SPF0 538 aaPredicted RBP18.68■□□□□ 0.58
VPS39-203ENST00000561797 ZNF444Q8N0Y2 327 aaPredicted RBP18.68■□□□□ 0.58
VPS39-203ENST00000561797 PXYLP1Q8TE99 480 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 FAM227BQ96M60 508 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.68■□□□□ 0.58
VPS39-203ENST00000561797 VCPKMTQ9H867 229 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 CWC22Q9HCG8 908 aaKnown RBP18.68■□□□□ 0.58
VPS39-203ENST00000561797 HELLSQ9NRZ9 838 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 GJD2Q9UKL4 321 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 A0A0G2JMZ2 1700 aa18.68■□□□□ 0.58
VPS39-203ENST00000561797 A0A0D9SFI3 127 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 INHAP05111 366 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 CYP2B6P20813 491 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 MAPK4P31152 587 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 PPARAQ07869 468 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 VPS53Q5VIR6 699 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 LPAR1Q92633 364 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 RNF208Q9H0X6 261 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 ZNF287Q9HBT7 754 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 BTBD7Q9P203 1132 aa18.67■□□□□ 0.58
VPS39-203ENST00000561797 FOXP2O15409 715 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 CCNA1P78396 465 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 NMIQ13287 307 aaPredicted RBP18.66■□□□□ 0.58
VPS39-203ENST00000561797 MCMDC2Q4G0Z9 681 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 WDR78Q5VTH9 848 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 GPR142Q7Z601 462 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 NUDT12Q9BQG2 462 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 UNC93B1Q9H1C4 597 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 OSBPL3Q9H4L5 887 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 HOXC10Q9NYD6 342 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 PDE4DIPQ5VU43 2346 aa18.66■□□□□ 0.58
VPS39-203ENST00000561797 CENPFP49454 3210 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 WDR46O15213 610 aaKnown RBP18.65■□□□□ 0.58
VPS39-203ENST00000561797 FLOT1O75955 427 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 SLC3A2P08195 630 aaKnown RBP18.65■□□□□ 0.58
VPS39-203ENST00000561797 CTDSPL2Q05D32 466 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 PDE4BQ07343 736 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 LBX2Q6XYB7 198 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 PLEKHH3Q7Z736 793 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 GOPCQ9HD26 462 aa18.65■□□□□ 0.58
VPS39-203ENST00000561797 DSG3P32926 999 aa18.64■□□□□ 0.57
VPS39-203ENST00000561797 FAM47AQ5JRC9 791 aa18.64■□□□□ 0.57
VPS39-203ENST00000561797 NYAP2Q9P242 653 aa18.64■□□□□ 0.57
VPS39-203ENST00000561797 CLIP2Q9UDT6 1046 aa18.64■□□□□ 0.57
VPS39-203ENST00000561797 TSPY3P0CV98 308 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 TSPY8P0CW00 308 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 SDSP20132 328 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 SOCS4Q8WXH5 440 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 ATG4CQ96DT6 458 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 INCENPQ9NQS7 918 aa18.63■□□□□ 0.57
VPS39-203ENST00000561797 IGKV6D-41A0A0C4DH26 115 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 HMGCRP04035 888 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 GJB1P08034 283 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 TFAP4Q01664 338 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 TRIM32Q13049 653 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 PLS1Q14651 629 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 FAM83BQ5T0W9 1011 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 ZNF589Q86UQ0 364 aaPredicted RBP18.62■□□□□ 0.57
VPS39-203ENST00000561797 TICAM2Q86XR7 235 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 TRIB2Q92519 343 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 CEP95Q96GE4 821 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 FBXO28Q9NVF7 368 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 PLXNA1Q9UIW2 1896 aa18.62■□□□□ 0.57
VPS39-203ENST00000561797 CCDC171Q6TFL3 1326 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 PDE4AP27815 886 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 RGS2P41220 211 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 GJA8P48165 433 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 ALX1Q15699 326 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 MORN1Q5T089 497 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 NEDD1Q8NHV4 660 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 NKX2-3Q8TAU0 364 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 SHISA4Q96DD7 197 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 NUP88Q99567 741 aaPredicted RBP18.61■□□□□ 0.57
VPS39-203ENST00000561797 MOV10L1Q9BXT6 1211 aaKnown RBP18.61■□□□□ 0.57
VPS39-203ENST00000561797 MTMR4Q9NYA4 1195 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 IVNS1ABPQ9Y6Y0 642 aa18.61■□□□□ 0.57
VPS39-203ENST00000561797 LAMA4Q16363 1823 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 F5H6K3 240 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 FGAP02671 866 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 HSPD1P10809 573 aaKnown RBP18.6■□□□□ 0.57
VPS39-203ENST00000561797 PTPREP23469 700 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms