RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 SPICE1Q8N0Z3 855 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 SOCS4Q8WXH5 440 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 EVI5LQ96CN4 794 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 UNC93B1Q9H1C4 597 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 PORCNQ9H237 461 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 MKNK2Q9HBH9 465 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 RABGAP1Q9Y3P9 1069 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 FRMPD3Q5JV73 1810 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 ZNF236Q9UL36 1845 aa17.56■□□□□ 0.4
LINC00661-203ENST00000549131 CNMDO75829 334 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 RASA1P20936 1047 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 CCNA1P78396 465 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 Q3C1V9 767 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 WDR78Q5VTH9 848 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 POTEEQ6S8J3 1075 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 IFNL3Q8IZI9 196 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 LPAR1Q92633 364 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 SHISA4Q96DD7 197 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 NAPBQ9H115 298 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 KANSL2Q9H9L4 492 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 TMX2Q9Y320 296 aa17.55■□□□□ 0.4
LINC00661-203ENST00000549131 PATL2C9JE40 543 aaKnown RBP17.54■□□□□ 0.4
LINC00661-203ENST00000549131 RAD21O60216 631 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 HMGCRP04035 888 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 EEF2P13639 858 aaKnown RBP17.54■□□□□ 0.4
LINC00661-203ENST00000549131 CYP2B6P20813 491 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 KIAA1755Q5JYT7 1200 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 SAMD1Q6SPF0 538 aaPredicted RBP17.54■□□□□ 0.4
LINC00661-203ENST00000549131 LBX2Q6XYB7 198 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 CCDC129Q6ZRS4 1044 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 GPR142Q7Z601 462 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 NKX2-3Q8TAU0 364 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 NUDT12Q9BQG2 462 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 VCPKMTQ9H867 229 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 GJD2Q9UKL4 321 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 LAMA4Q16363 1823 aa17.54■□□□□ 0.4
LINC00661-203ENST00000549131 WDR46O15213 610 aaKnown RBP17.53■□□□□ 0.4
LINC00661-203ENST00000549131 PRDM1O75626 825 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 FLOT1O75955 427 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 IGHDP01880 384 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 GJB1P08034 283 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 PRPF38BQ5VTL8 546 aaKnown RBP17.53■□□□□ 0.4
LINC00661-203ENST00000549131 PLEKHH3Q7Z736 793 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 SIAH1Q8IUQ4 282 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 ZNF287Q9HBT7 754 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 GOPCQ9HD26 462 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 BTBD7Q9P203 1132 aa17.53■□□□□ 0.4
LINC00661-203ENST00000549131 PLXNA1Q9UIW2 1896 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 TRIM6-TRIM34B2RNG4 842 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 GJA8P48165 433 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 COG2Q14746 738 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 CHD1LQ86WJ1 897 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 U2AF1L4Q8WU68 220 aaKnown RBP17.52■□□□□ 0.4
LINC00661-203ENST00000549131 TRIB2Q92519 343 aa17.52■□□□□ 0.4
LINC00661-203ENST00000549131 ZNFX1Q9P2E3 1918 aaKnown RBP17.52■□□□□ 0.4
LINC00661-203ENST00000549131 SLC3A2P08195 630 aaKnown RBP17.51■□□□□ 0.39
LINC00661-203ENST00000549131 ZKSCAN1P17029 563 aaPredicted RBP17.51■□□□□ 0.39
LINC00661-203ENST00000549131 RGS2P41220 211 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 IRX6P78412 446 aaPredicted RBP17.51■□□□□ 0.39
LINC00661-203ENST00000549131 NUCB1Q02818 461 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 PPARAQ07869 468 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 APBA2Q99767 749 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 HOXC10Q9NYD6 342 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 IVNS1ABPQ9Y6Y0 642 aa17.51■□□□□ 0.39
LINC00661-203ENST00000549131 A0A0D9SFI3 127 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 PDE4BQ07343 736 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 TRIM32Q13049 653 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 ZNF444Q8N0Y2 327 aaPredicted RBP17.5■□□□□ 0.39
LINC00661-203ENST00000549131 RILPL2Q969X0 211 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 ATG4CQ96DT6 458 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 DEFB118Q96PH6 123 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.5■□□□□ 0.39
LINC00661-203ENST00000549131 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.5■□□□□ 0.39
LINC00661-203ENST00000549131 PAK6Q9NQU5 681 aaPredicted RBP17.5■□□□□ 0.39
LINC00661-203ENST00000549131 PLIN4Q96Q06 1357 aa17.5■□□□□ 0.39
LINC00661-203ENST00000549131 ALPK3Q96L96 1907 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 FOXP2O15409 715 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 XRCC5P13010 732 aaKnown RBP17.49■□□□□ 0.39
LINC00661-203ENST00000549131 DSG3P32926 999 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 PLS1Q14651 629 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 MORN1Q5T089 497 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 FAM83BQ5T0W9 1011 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 VPS53Q5VIR6 699 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 MB21D1Q8N884 522 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 FAM227BQ96M60 508 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 HELLSQ9NRZ9 838 aa17.49■□□□□ 0.39
LINC00661-203ENST00000549131 CEP290O15078 2479 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 FARP2O94887 1054 aaPredicted RBP17.48■□□□□ 0.39
LINC00661-203ENST00000549131 SGPL1O95470 568 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 TSPY3P0CV98 308 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 TSPY8P0CW00 308 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 PRKAR2AP13861 404 aaKnown RBP17.48■□□□□ 0.39
LINC00661-203ENST00000549131 MAP2K5Q13163 448 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 NMIQ13287 307 aaPredicted RBP17.48■□□□□ 0.39
LINC00661-203ENST00000549131 PLEKHM2Q8IWE5 1019 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 TRMT44Q8IYL2 757 aaKnown RBP17.48■□□□□ 0.39
LINC00661-203ENST00000549131 USP6NLQ92738 828 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 MOV10L1Q9BXT6 1211 aaKnown RBP17.48■□□□□ 0.39
LINC00661-203ENST00000549131 SPATC1LQ9H0A9 340 aa17.48■□□□□ 0.39
LINC00661-203ENST00000549131 HMX1Q9NP08 348 aaPredicted RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms