RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GPSM2P81274 684 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 INF2Q27J81 1249 aa19.28■□□□□ 0.68
USP28-208ENST00000540438 CUL4BQ13620 913 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 PAGE5Q96GU1 130 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 BRIP1Q9BX63 1249 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 FANCGO15287 622 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 ATP2B2Q01814 1243 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 UBE2Q2Q8WVN8 375 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 RTL9Q8NET4 1388 aa19.27■□□□□ 0.68
USP28-208ENST00000540438 ERCC6LQ2NKX8 1250 aa19.27■□□□□ 0.67
USP28-208ENST00000540438 TOGARAM2Q6ZUX3 1019 aa19.27■□□□□ 0.67
USP28-208ENST00000540438 ZMYND15Q9H091 742 aa19.27■□□□□ 0.67
USP28-208ENST00000540438 CTNND2Q9UQB3 1225 aa19.27■□□□□ 0.67
USP28-208ENST00000540438 TFRCP02786 760 aaKnown RBP19.26■□□□□ 0.67
USP28-208ENST00000540438 SCG2P13521 617 aa19.26■□□□□ 0.67
USP28-208ENST00000540438 TIGD1Q96MW7 591 aa19.26■□□□□ 0.67
USP28-208ENST00000540438 GDAQ9Y2T3 454 aa19.26■□□□□ 0.67
USP28-208ENST00000540438 PRPF3O43395 683 aaKnown RBP19.26■□□□□ 0.67
USP28-208ENST00000540438 NYAP1Q6ZVC0 841 aa19.26■□□□□ 0.67
USP28-208ENST00000540438 GJA10Q969M2 543 aa19.26■□□□□ 0.67
USP28-208ENST00000540438 OSBPL5Q9H0X9 879 aaPredicted RBP19.26■□□□□ 0.67
USP28-208ENST00000540438 FRMPD2Q68DX3 1309 aaPredicted RBP19.26■□□□□ 0.67
USP28-208ENST00000540438 RPGRQ92834 1020 aaKnown RBP19.25■□□□□ 0.67
USP28-208ENST00000540438 NYXQ9GZU5 481 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 VPS16Q9H269 839 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 TMEM60Q9H2L4 133 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 CHD4Q14839 1912 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 CYTH3O43739 400 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 SCNN1DP51172 638 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 ZNF444Q8N0Y2 327 aaPredicted RBP19.25■□□□□ 0.67
USP28-208ENST00000540438 ANAPC4Q9UJX5 808 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.25■□□□□ 0.67
USP28-208ENST00000540438 URI1O94763 535 aaPredicted RBP19.25■□□□□ 0.67
USP28-208ENST00000540438 GTF2F1P35269 517 aaKnown RBP eCLIP19.25■□□□□ 0.67
USP28-208ENST00000540438 GSDMDP57764 484 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 MTRQ99707 1265 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 LZTFL1Q9NQ48 299 aa19.25■□□□□ 0.67
USP28-208ENST00000540438 TRIM49BA6NDI0 452 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 FAM196BA6NMK8 535 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 BTDP43251 543 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 KIF18AQ8NI77 898 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 HPS3Q969F9 1004 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 PLCH1Q4KWH8 1693 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 DOK7Q18PE1 504 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 GLIPR1L2Q4G1C9 344 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 RRAGBQ5VZM2 374 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 PRR5LQ6MZQ0 368 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 VSTM4Q8IW00 320 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 BRMS1Q9HCU9 246 aa19.24■□□□□ 0.67
USP28-208ENST00000540438 ECM29Q5VYK3 1845 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 SOWAHDA6NJG2 315 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 IKBKBO14920 756 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 CACNB3P54284 484 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 MORC3Q14149 939 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 TRIM37O94972 964 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 SLC10A5Q5PT55 438 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 MFSD14BQ5SR56 506 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 BPIFA3Q9BQP9 254 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 CACNA1SQ13698 1873 aa19.23■□□□□ 0.67
USP28-208ENST00000540438 GTF2IP78347 998 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 ANKRD2Q9GZV1 360 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 ABL1P00519 1130 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 LRRC47Q8N1G4 583 aaKnown RBP19.22■□□□□ 0.67
USP28-208ENST00000540438 CEP131Q9UPN4 1083 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 XDHP47989 1333 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 SHROOM1Q2M3G4 852 aaPredicted RBP19.22■□□□□ 0.67
USP28-208ENST00000540438 C12orf60Q5U649 245 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 JAKMIP3Q5VZ66 844 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 WWC2Q6AWC2 1192 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 TEX11Q8IYF3 940 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 TMEM47Q9BQJ4 181 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 TFR2Q9UP52 801 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 PCDHAC2Q9Y5I4 1007 aa19.22■□□□□ 0.67
USP28-208ENST00000540438 LETM2Q2VYF4 491 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 MSL1Q68DK7 614 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 ST7Q9NRC1 585 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 TAB2Q9NYJ8 693 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 HOOK1Q9UJC3 728 aaKnown RBP19.21■□□□□ 0.67
USP28-208ENST00000540438 PHLPP1O60346 1717 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 LRP5O75197 1615 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 VPS72Q15906 364 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 CCDC150Q8NCX0 1101 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 WDR24Q96S15 920 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 CCDC94Q9BW85 323 aaPredicted RBP19.21■□□□□ 0.67
USP28-208ENST00000540438 ATP8A2Q9NTI2 1148 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 TMEM260Q9NX78 707 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 POLLQ9UGP5 575 aa19.21■□□□□ 0.67
USP28-208ENST00000540438 CTIFO43310 598 aaKnown RBP19.2■□□□□ 0.66
USP28-208ENST00000540438 NEMFO60524 1076 aa19.2■□□□□ 0.66
USP28-208ENST00000540438 KCNQ5Q9NR82 932 aa19.2■□□□□ 0.66
USP28-208ENST00000540438 BIN2Q9UBW5 565 aaPredicted RBP19.2■□□□□ 0.66
USP28-208ENST00000540438 CCDC194A0A1B0GVG4 234 aa19.2■□□□□ 0.66
USP28-208ENST00000540438 RNF225M0QZC1 329 aaPredicted RBP19.2■□□□□ 0.66
USP28-208ENST00000540438 BAG1Q99933 345 aaPredicted RBP19.2■□□□□ 0.66
USP28-208ENST00000540438 PAXBP1Q9Y5B6 917 aa19.2■□□□□ 0.66
USP28-208ENST00000540438 CNTNAP4Q9C0A0 1308 aa19.2■□□□□ 0.66
USP28-208ENST00000540438 SLFN14P0C7P3 912 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 SARSP49591 514 aaKnown RBP19.19■□□□□ 0.66
USP28-208ENST00000540438 GNG11P61952 73 aa19.19■□□□□ 0.66
USP28-208ENST00000540438 RBL2Q08999 1139 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms