RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 MBD4O95243 580 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 GRB14Q14449 540 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 SLFNL1Q499Z3 407 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 HAUS7Q99871 368 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 GDF15Q99988 308 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.66■■□□□ 1.86
HDDC3-203ENST00000494993 ATP8A2Q9NTI2 1148 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 FLRT1Q9NZU1 646 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 RCAN3Q9UKA8 241 aa26.66■■□□□ 1.86
HDDC3-203ENST00000494993 COL11A1P12107 1806 aaPredicted RBP26.66■■□□□ 1.86
HDDC3-203ENST00000494993 LAMA3Q16787 3333 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 PRKAB2O43741 272 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 HOXC6P09630 235 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 COL6A1P12109 1028 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 COG2Q14746 738 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 MFSD14CQ5VZR4 134 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 DYNLL2Q96FJ2 89 aa26.65■■□□□ 1.86
HDDC3-203ENST00000494993 BMP8BP34820 402 aa26.64■■□□□ 1.86
HDDC3-203ENST00000494993 TANGO6Q9C0B7 1094 aa26.64■■□□□ 1.86
HDDC3-203ENST00000494993 HOXC10Q9NYD6 342 aa26.64■■□□□ 1.86
HDDC3-203ENST00000494993 NPLOC4Q8TAT6 608 aa26.63■■□□□ 1.85
HDDC3-203ENST00000494993 AKR1B1P15121 316 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 SYN1P17600 705 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 ATP2B2Q01814 1243 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 UBE3CQ15386 1083 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 KIAA1755Q5JYT7 1200 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 MOV10L1Q9BXT6 1211 aaKnown RBP26.62■■□□□ 1.85
HDDC3-203ENST00000494993 ARHGEF10LQ9HCE6 1279 aa26.62■■□□□ 1.85
HDDC3-203ENST00000494993 SOX1O00570 391 aaPredicted RBP26.61■■□□□ 1.85
HDDC3-203ENST00000494993 CHGBP05060 677 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 ICA1Q05084 483 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 C12orf60Q5U649 245 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 CLEC10AQ8IUN9 316 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 LPAR1Q92633 364 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 LRRCC1Q9C099 1032 aa26.61■■□□□ 1.85
HDDC3-203ENST00000494993 CYP2D7A0A087X1C5 515 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 SIAH1Q8IUQ4 282 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 AMOTL1Q8IY63 956 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 CCDC17Q96LX7 622 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 SPATC1LQ9H0A9 340 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 SH2D4AQ9H788 454 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 TMX2Q9Y320 296 aa26.6■■□□□ 1.85
HDDC3-203ENST00000494993 GREB1LQ9C091 1923 aaPredicted RBP26.59■■□□□ 1.85
HDDC3-203ENST00000494993 USP17L12C9JPN9 530 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 USP17L21D6R901 530 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 SMIM22K7EJ46 135 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 DSG3P32926 999 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 CDK8P49336 464 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 C20orf194Q5TEA3 1177 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 MB21D1Q8N884 522 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 SHCBP1Q8NEM2 672 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 LRCH3Q96II8 777 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 VCPKMTQ9H867 229 aa26.59■■□□□ 1.85
HDDC3-203ENST00000494993 DDX20Q9UHI6 824 aaKnown RBP26.59■■□□□ 1.85
HDDC3-203ENST00000494993 PLXNA1Q9UIW2 1896 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 STRNO43815 780 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 MSCO60682 206 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 IGHA2P01877 340 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 ADORA2AP29274 412 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 CYP2C19P33261 490 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 MAGEA10P43363 369 aaPredicted RBP26.58■■□□□ 1.85
HDDC3-203ENST00000494993 LRRC26Q2I0M4 334 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 ZSCAN25Q6NSZ9 544 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 C16orf86Q6ZW13 317 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 DPP9Q86TI2 863 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 DDRGK1Q96HY6 314 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 SLC4A4Q9Y6R1 1079 aa26.58■■□□□ 1.85
HDDC3-203ENST00000494993 SMARCA5O60264 1052 aaPredicted RBP26.57■■□□□ 1.84
HDDC3-203ENST00000494993 FLOT1O75955 427 aa26.57■■□□□ 1.84
HDDC3-203ENST00000494993 ERCC3P19447 782 aa26.57■■□□□ 1.84
HDDC3-203ENST00000494993 CNGA1P29973 690 aa26.57■■□□□ 1.84
HDDC3-203ENST00000494993 SPICE1Q8N0Z3 855 aa26.57■■□□□ 1.84
HDDC3-203ENST00000494993 DNAH12Q6ZR08 3092 aa26.57■■□□□ 1.84
HDDC3-203ENST00000494993 TRPV1Q8NER1 839 aa26.56■■□□□ 1.84
HDDC3-203ENST00000494993 ATG4CQ96DT6 458 aa26.56■■□□□ 1.84
HDDC3-203ENST00000494993 PUS7LQ9H0K6 701 aaKnown RBP26.56■■□□□ 1.84
HDDC3-203ENST00000494993 WDR46O15213 610 aaKnown RBP26.55■■□□□ 1.84
HDDC3-203ENST00000494993 CYBAP13498 195 aa26.55■■□□□ 1.84
HDDC3-203ENST00000494993 PLS1Q14651 629 aa26.55■■□□□ 1.84
HDDC3-203ENST00000494993 OLFML2BQ68BL8 750 aa26.55■■□□□ 1.84
HDDC3-203ENST00000494993 MYH4Q9Y623 1939 aa26.55■■□□□ 1.84
HDDC3-203ENST00000494993 CTR9Q6PD62 1173 aa26.54■■□□□ 1.84
HDDC3-203ENST00000494993 MROH8Q9H579 483 aa26.54■■□□□ 1.84
HDDC3-203ENST00000494993 SMCHD1A6NHR9 2005 aa26.54■■□□□ 1.84
HDDC3-203ENST00000494993 COBLO75128 1261 aa26.53■■□□□ 1.84
HDDC3-203ENST00000494993 EEF2P13639 858 aaKnown RBP26.53■■□□□ 1.84
HDDC3-203ENST00000494993 NCAPG2Q86XI2 1143 aa26.53■■□□□ 1.84
HDDC3-203ENST00000494993 SENP6Q9GZR1 1112 aaPredicted RBP26.53■■□□□ 1.84
HDDC3-203ENST00000494993 KANSL2Q9H9L4 492 aa26.53■■□□□ 1.84
HDDC3-203ENST00000494993 ECHDC1Q9NTX5 307 aa26.53■■□□□ 1.84
HDDC3-203ENST00000494993 SAMD1Q6SPF0 538 aaPredicted RBP26.52■■□□□ 1.84
HDDC3-203ENST00000494993 TDHQ8IZJ6 230 aa26.52■■□□□ 1.84
HDDC3-203ENST00000494993 ABRAQ8N0Z2 381 aa26.52■■□□□ 1.84
HDDC3-203ENST00000494993 UBE2OQ9C0C9 1292 aaKnown RBP26.52■■□□□ 1.84
HDDC3-203ENST00000494993 SLC5A4Q9NY91 659 aa26.52■■□□□ 1.84
HDDC3-203ENST00000494993 ARPP21Q9UBL0 812 aaPredicted RBP26.52■■□□□ 1.84
HDDC3-203ENST00000494993 DNM1LO00429 736 aa26.51■■□□□ 1.83
HDDC3-203ENST00000494993 LRIT3Q3SXY7 679 aa26.51■■□□□ 1.83
HDDC3-203ENST00000494993 TMEM132BQ14DG7 1078 aa26.5■■□□□ 1.83
HDDC3-203ENST00000494993 STRBPQ96SI9 672 aaKnown RBP26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms