RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TMCO5BA8MYB1 307 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 ERCC5P28715 1186 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 ADKP55263 362 aaKnown RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 GJB4Q9NTQ9 266 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 FER1L4A9Z1Z3 1794 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 CCDC172P0C7W6 258 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 LONP1P36776 959 aaKnown RBP16.42■□□□□ 0.22
HDAC6-220ENST00000477528 CALCRLQ16602 461 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 PKNOX2Q96KN3 472 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 GSDMAQ96QA5 445 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 SAMM50Q9Y512 469 aa16.42■□□□□ 0.22
HDAC6-220ENST00000477528 KLRF2D3W0D1 207 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 CHGBP05060 677 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 NKX1-1Q15270 411 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-220ENST00000477528 DRC1Q96MC2 740 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 NAPGQ99747 312 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-220ENST00000477528 BRIP1Q9BX63 1249 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 TSC1Q92574 1164 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 GOLPH3LQ9H4A5 285 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 BTDP43251 543 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 SNX29Q8TEQ0 813 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 UBE2Q2Q8WVN8 375 aa16.41■□□□□ 0.22
HDAC6-220ENST00000477528 GPKOWQ92917 476 aaPredicted RBP eCLIP16.41■□□□□ 0.221e-6■□□□□ 11.3
HDAC6-220ENST00000477528 SOS2Q07890 1332 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-220ENST00000477528 MCM6Q14566 821 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 INF2Q27J81 1249 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 FMR1NBQ8N0W7 255 aaPredicted RBP16.4■□□□□ 0.22
HDAC6-220ENST00000477528 TSGA10Q9BZW7 698 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 SRPRBQ9Y5M8 271 aaKnown RBP16.4■□□□□ 0.22
HDAC6-220ENST00000477528 SNAP23O00161 211 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 TRAF5O00463 557 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 ETF1P62495 437 aaKnown RBP16.4■□□□□ 0.22
HDAC6-220ENST00000477528 GTF2IP78347 998 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 CTR9Q6PD62 1173 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 TAF6LQ9Y6J9 622 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 CPDO75976 1380 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 LY9Q9HBG7 655 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 CALCOCO1Q9P1Z2 691 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 RCAN1P53805 252 aa16.4■□□□□ 0.22
HDAC6-220ENST00000477528 KIAA0754O94854 1291 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 MEGF6O75095 1541 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 UBR1Q8IWV7 1749 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 MORC3Q14149 939 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 HAUS3Q68CZ6 603 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 ZNF512BQ96KM6 892 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-220ENST00000477528 SLFN14P0C7P3 912 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 U2AF2P26368 475 aaKnown RBP eCLIP16.39■□□□□ 0.211e-7■■□□□ 14.2
HDAC6-220ENST00000477528 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.212e-6■■■■■ 28.7
HDAC6-220ENST00000477528 SLC1A4P43007 532 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 NT5C2P49902 561 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 LONRF3Q496Y0 759 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 RESP18Q5W5W9 173 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 SGMS1Q86VZ5 419 aa16.39■□□□□ 0.21
HDAC6-220ENST00000477528 KCNJ18B7U540 433 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 MECOMQ03112 1051 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 KCNJ12Q14500 433 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 FCHSD1Q86WN1 690 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 TSPYL1Q9H0U9 437 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 MAN1B1Q9UKM7 699 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 PPP2R2CQ9Y2T4 447 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 PCDHB6Q9Y5E3 794 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 CYP2D7A0A087X1C5 515 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 FAM13AO94988 1023 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 OR52Z1P0C646 297 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 TBC1D5Q92609 795 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 BIN2Q9UBW5 565 aaPredicted RBP16.38■□□□□ 0.21
HDAC6-220ENST00000477528 COL15A1P39059 1388 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 KDM6AO15550 1401 aaPredicted RBP16.38■□□□□ 0.21
HDAC6-220ENST00000477528 CHMP4BP1P59074 171 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 HLTFQ14527 1009 aaKnown RBP eCLIP16.38■□□□□ 0.21
HDAC6-220ENST00000477528 NEK8Q86SG6 692 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 PCDHA4Q9UN74 947 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 H7C1D1 291 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 STX10O60499 249 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 ALDH1B1P30837 517 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 KCNQ4P56696 695 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 TMED8Q6PL24 325 aaPredicted RBP16.38■□□□□ 0.21
HDAC6-220ENST00000477528 CAPZA3Q96KX2 299 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 USP40Q9NVE5 1235 aa16.38■□□□□ 0.21
HDAC6-220ENST00000477528 RPN1P04843 607 aaKnown RBP16.37■□□□□ 0.21
HDAC6-220ENST00000477528 RHOXF2BP0C7M4 288 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 GOLGA8HP0CJ92 632 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 RPL13P26373 211 aaKnown RBP16.37■□□□□ 0.21
HDAC6-220ENST00000477528 RHOXF2Q9BQY4 288 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 MON2Q7Z3U7 1717 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 GSG1L2A8MUP6 293 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 CDC27P30260 824 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 ARID5AQ03989 594 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 HS2ST1Q7LGA3 356 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 PLA2G4DQ86XP0 818 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 ENOX1Q8TC92 643 aaKnown RBP16.37■□□□□ 0.21
HDAC6-220ENST00000477528 INCENPQ9NQS7 918 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 ZNF215Q9UL58 517 aaPredicted RBP16.37■□□□□ 0.21
HDAC6-220ENST00000477528 KRT13P13646 458 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 USP8P40818 1118 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 LMAN1P49257 510 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 DCCP43146 1447 aa16.37■□□□□ 0.21
HDAC6-220ENST00000477528 LAD1O00515 517 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 MINPP1Q9UNW1 487 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms