RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 BIN2Q9UBW5 565 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-203ENST00000474056 TMX2Q9Y320 296 aa21.44■■□□□ 1.02
UPF3A-203ENST00000474056 SPDYE16A6NNV3 312 aaPredicted RBP21.43■■□□□ 1.02
UPF3A-203ENST00000474056 PLEKHM2Q8IWE5 1019 aa21.43■■□□□ 1.02
UPF3A-203ENST00000474056 PXYLP1Q8TE99 480 aa21.43■■□□□ 1.02
UPF3A-203ENST00000474056 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.43■■□□□ 1.02
UPF3A-203ENST00000474056 PORCNQ9H237 461 aa21.43■■□□□ 1.02
UPF3A-203ENST00000474056 MKNK2Q9HBH9 465 aa21.43■■□□□ 1.02
UPF3A-203ENST00000474056 GJD2Q9UKL4 321 aa21.43■■□□□ 1.02
UPF3A-203ENST00000474056 FOXP2O15409 715 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 EEF2P13639 858 aaKnown RBP21.42■■□□□ 1.02
UPF3A-203ENST00000474056 UBXN2AP68543 259 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 ATP2B2Q01814 1243 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 LBX2Q6XYB7 198 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 NACAP1Q9BZK3 213 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 NAPBQ9H115 298 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 SH2D4AQ9H788 454 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 VCPKMTQ9H867 229 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 RABGAP1Q9Y3P9 1069 aa21.42■■□□□ 1.02
UPF3A-203ENST00000474056 TRIM6-TRIM34B2RNG4 842 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 PRDM1O75626 825 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 SPICE1Q8N0Z3 855 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 LPAR1Q92633 364 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 TANGO6Q9C0B7 1094 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 KANSL2Q9H9L4 492 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 BTBD7Q9P203 1132 aa21.41■■□□□ 1.02
UPF3A-203ENST00000474056 A0A0D9SFI3 127 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 INHAP05111 366 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 CCL5P13501 91 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 MAPK4P31152 587 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 VPS53Q5VIR6 699 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 RILPL2Q969X0 211 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 FAM227BQ96M60 508 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 OSBPL3Q9H4L5 887 aa21.4■■□□□ 1.02
UPF3A-203ENST00000474056 ZNFX1Q9P2E3 1918 aaKnown RBP21.39■■□□□ 1.02
UPF3A-203ENST00000474056 PPARAQ07869 468 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 GPR142Q7Z601 462 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 SHISA4Q96DD7 197 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 RNF208Q9H0X6 261 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 UNC93B1Q9H1C4 597 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 HELLSQ9NRZ9 838 aa21.39■■□□□ 1.01
UPF3A-203ENST00000474056 WDR46O15213 610 aaKnown RBP21.38■■□□□ 1.01
UPF3A-203ENST00000474056 CYP2B6P20813 491 aa21.38■■□□□ 1.01
UPF3A-203ENST00000474056 COG2Q14746 738 aa21.38■■□□□ 1.01
UPF3A-203ENST00000474056 CCAR1Q8IX12 1150 aaKnown RBP21.38■■□□□ 1.01
UPF3A-203ENST00000474056 NUDT12Q9BQG2 462 aa21.38■■□□□ 1.01
UPF3A-203ENST00000474056 IGKV6D-41A0A0C4DH26 115 aa21.37■■□□□ 1.01
UPF3A-203ENST00000474056 CCNA1P78396 465 aa21.37■■□□□ 1.01
UPF3A-203ENST00000474056 NMIQ13287 307 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-203ENST00000474056 PLEKHH3Q7Z736 793 aa21.37■■□□□ 1.01
UPF3A-203ENST00000474056 ZNF444Q8N0Y2 327 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-203ENST00000474056 ZNF287Q9HBT7 754 aa21.37■■□□□ 1.01
UPF3A-203ENST00000474056 PLIN4Q96Q06 1357 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 RAD21O60216 631 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 FLOT1O75955 427 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 HMGCRP04035 888 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 GJB1P08034 283 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 DSG3P32926 999 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 TRIM32Q13049 653 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 MCMDC2Q4G0Z9 681 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 MORN1Q5T089 497 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 ZNF589Q86UQ0 364 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-203ENST00000474056 SOCS4Q8WXH5 440 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 TRIB2Q92519 343 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 USP6NLQ92738 828 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 ATG4CQ96DT6 458 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 CWC22Q9HCG8 908 aaKnown RBP21.36■■□□□ 1.01
UPF3A-203ENST00000474056 GOPCQ9HD26 462 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 HOXC10Q9NYD6 342 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 NYAP2Q9P242 653 aa21.36■■□□□ 1.01
UPF3A-203ENST00000474056 ZNF236Q9UL36 1845 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 GJA8P48165 433 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 CTDSPL2Q05D32 466 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 PDE4BQ07343 736 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 WDR78Q5VTH9 848 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 SAMD1Q6SPF0 538 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-203ENST00000474056 TICAM2Q86XR7 235 aa21.35■■□□□ 1.01
UPF3A-203ENST00000474056 SLC3A2P08195 630 aaKnown RBP21.34■■□□□ 1.01
UPF3A-203ENST00000474056 FAM47AQ5JRC9 791 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 FAM83BQ5T0W9 1011 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 NKX2-3Q8TAU0 364 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 CEP95Q96GE4 821 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 FBXO28Q9NVF7 368 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 TACC3Q9Y6A5 838 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 LAMA4Q16363 1823 aa21.34■■□□□ 1.01
UPF3A-203ENST00000474056 TSPY3P0CV98 308 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 TSPY8P0CW00 308 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 SDSP20132 328 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 PDE4AP27815 886 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 NEDD1Q8NHV4 660 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 U2AF1L4Q8WU68 220 aaKnown RBP21.33■■□□□ 1.01
UPF3A-203ENST00000474056 MOV10L1Q9BXT6 1211 aaKnown RBP21.33■■□□□ 1.01
UPF3A-203ENST00000474056 SPATC1LQ9H0A9 340 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 INCENPQ9NQS7 918 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 MTMR4Q9NYA4 1195 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 CLIP2Q9UDT6 1046 aa21.33■■□□□ 1.01
UPF3A-203ENST00000474056 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.33■■□□□ 1.01
UPF3A-203ENST00000474056 CCDC171Q6TFL3 1326 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 FRMPD3Q5JV73 1810 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 HSPD1P10809 573 aaKnown RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms