RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 A0A1W2PRG0 241 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 PTPREP23469 700 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 CNGA1P29973 690 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 MNX1P50219 401 aaPredicted RBP17.5■□□□□ 0.39
SDC1-204ENST00000429035 ATP2B2Q01814 1243 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 ICA1Q05084 483 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 TMEM179Q6ZVK1 233 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 DDRGK1Q96HY6 314 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 ARHGEF10LQ9HCE6 1279 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 SWAP70Q9UH65 585 aa17.5■□□□□ 0.39
SDC1-204ENST00000429035 RANBP2P49792 3224 aaKnown RBP17.49■□□□□ 0.39
SDC1-204ENST00000429035 CYP2D7A0A087X1C5 515 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 SLC15A5A6NIM6 579 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 SMARCA5O60264 1052 aaPredicted RBP17.49■□□□□ 0.39
SDC1-204ENST00000429035 CHGBP05060 677 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 AKR1B1P15121 316 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 PLS1Q14651 629 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 SPICE1Q8N0Z3 855 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 FLRT1Q9NZU1 646 aa17.49■□□□□ 0.39
SDC1-204ENST00000429035 RAD21O60216 631 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 ATP5JP18859 108 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 GRB14Q14449 540 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 LBX2Q6XYB7 198 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 NPLOC4Q8TAT6 608 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 HAUS7Q99871 368 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 LRRCC1Q9C099 1032 aa17.48■□□□□ 0.39
SDC1-204ENST00000429035 SZT2Q5T011 3432 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 A0A1W2PPC1 479 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 SOX1O00570 391 aaPredicted RBP17.47■□□□□ 0.39
SDC1-204ENST00000429035 FLOT1O75955 427 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 CYP2C19P33261 490 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 C20orf194Q5TEA3 1177 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 DPP9Q86TI2 863 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 LRCH3Q96II8 777 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 MOV10L1Q9BXT6 1211 aaKnown RBP17.47■□□□□ 0.39
SDC1-204ENST00000429035 SH2D4AQ9H788 454 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 ATP8A2Q9NTI2 1148 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 SLC4A4Q9Y6R1 1079 aa17.47■□□□□ 0.39
SDC1-204ENST00000429035 SMIM22K7EJ46 135 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 ADORA2AP29274 412 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 MAGEA10P43363 369 aaPredicted RBP17.46■□□□□ 0.39
SDC1-204ENST00000429035 COG2Q14746 738 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 KIAA1755Q5JYT7 1200 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 LHX8Q68G74 356 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 NCAPG2Q86XI2 1143 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 STK11IPQ8N1F8 1099 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 ATG4CQ96DT6 458 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 SPATC1LQ9H0A9 340 aa17.46■□□□□ 0.39
SDC1-204ENST00000429035 DDX20Q9UHI6 824 aaKnown RBP17.46■□□□□ 0.39
SDC1-204ENST00000429035 ZNFX1Q9P2E3 1918 aaKnown RBP17.46■□□□□ 0.39
SDC1-204ENST00000429035 PLXNA1Q9UIW2 1896 aa17.46■□□□□ 0.38
SDC1-204ENST00000429035 USP17L12C9JPN9 530 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 USP17L21D6R901 530 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 MYCNP04198 464 aaPredicted RBP17.45■□□□□ 0.38
SDC1-204ENST00000429035 ERCC3P19447 782 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 CDK8P49336 464 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 LRRC26Q2I0M4 334 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 ZSCAN25Q6NSZ9 544 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 LPAR1Q92633 364 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 GDF15Q99988 308 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 VCPKMTQ9H867 229 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 HOXC10Q9NYD6 342 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 MYH4Q9Y623 1939 aa17.45■□□□□ 0.38
SDC1-204ENST00000429035 UBE3CQ15386 1083 aa17.44■□□□□ 0.38
SDC1-204ENST00000429035 C12orf60Q5U649 245 aa17.44■□□□□ 0.38
SDC1-204ENST00000429035 ANO1Q5XXA6 986 aa17.44■□□□□ 0.38
SDC1-204ENST00000429035 UBE2OQ9C0C9 1292 aaKnown RBP17.44■□□□□ 0.38
SDC1-204ENST00000429035 SENP6Q9GZR1 1112 aaPredicted RBP17.44■□□□□ 0.38
SDC1-204ENST00000429035 WDR46O15213 610 aaKnown RBP17.43■□□□□ 0.38
SDC1-204ENST00000429035 MSCO60682 206 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 COL6A1P12109 1028 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 DSG3P32926 999 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 ATN1P54259 1190 aaPredicted RBP17.43■□□□□ 0.38
SDC1-204ENST00000429035 TSHZ3Q63HK5 1081 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 C16orf86Q6ZW13 317 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 MB21D1Q8N884 522 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 GPATCH3Q96I76 525 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 CCDC17Q96LX7 622 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 PUS7LQ9H0K6 701 aaKnown RBP17.43■□□□□ 0.38
SDC1-204ENST00000429035 TMX2Q9Y320 296 aa17.43■□□□□ 0.38
SDC1-204ENST00000429035 GREB1LQ9C091 1923 aaPredicted RBP17.43■□□□□ 0.38
SDC1-204ENST00000429035 HOXC6P09630 235 aa17.42■□□□□ 0.38
SDC1-204ENST00000429035 EEF2P13639 858 aaKnown RBP17.42■□□□□ 0.38
SDC1-204ENST00000429035 MDM2Q00987 491 aaPredicted RBP17.42■□□□□ 0.38
SDC1-204ENST00000429035 SHCBP1Q8NEM2 672 aa17.42■□□□□ 0.38
SDC1-204ENST00000429035 TRPV1Q8NER1 839 aa17.42■□□□□ 0.38
SDC1-204ENST00000429035 ARPP21Q9UBL0 812 aaPredicted RBP17.42■□□□□ 0.38
SDC1-204ENST00000429035 CYBAP13498 195 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 BMP8BP34820 402 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 CTR9Q6PD62 1173 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 GOPCQ9HD26 462 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 ECHDC1Q9NTX5 307 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 FBXO28Q9NVF7 368 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 SLC5A4Q9NY91 659 aa17.41■□□□□ 0.38
SDC1-204ENST00000429035 LAMA3Q16787 3333 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 KBTBD13C9JR72 458 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 COBLO75128 1261 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 FAM83BQ5T0W9 1011 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 GJC2Q5T442 439 aaPredicted RBP17.4■□□□□ 0.38
SDC1-204ENST00000429035 SIAH1Q8IUQ4 282 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms