RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PATL2C9JE40 543 aaKnown RBP19.49■□□□□ 0.71
LSM1-201ENST00000311351 FOXP2O15409 715 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 CNMDO75829 334 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 RASA1P20936 1047 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 ATP2B2Q01814 1243 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 IRF5Q13568 498 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 Q3C1V9 767 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 GTF3C2Q8WUA4 911 aaPredicted RBP19.49■□□□□ 0.71
LSM1-201ENST00000311351 TANGO6Q9C0B7 1094 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 PORCNQ9H237 461 aa19.49■□□□□ 0.71
LSM1-201ENST00000311351 SPDYE16A6NNV3 312 aaPredicted RBP19.48■□□□□ 0.71
LSM1-201ENST00000311351 PRDM1O75626 825 aa19.48■□□□□ 0.71
LSM1-201ENST00000311351 EEF2P13639 858 aaKnown RBP19.48■□□□□ 0.71
LSM1-201ENST00000311351 SPICE1Q8N0Z3 855 aa19.48■□□□□ 0.71
LSM1-201ENST00000311351 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.48■□□□□ 0.71
LSM1-201ENST00000311351 NACAP1Q9BZK3 213 aa19.48■□□□□ 0.71
LSM1-201ENST00000311351 TMX2Q9Y320 296 aa19.48■□□□□ 0.71
LSM1-201ENST00000311351 A0A0D9SFI3 127 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 VPS53Q5VIR6 699 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 PLEKHM2Q8IWE5 1019 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 FAM227BQ96M60 508 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 NAPBQ9H115 298 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 SH2D4AQ9H788 454 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 VCPKMTQ9H867 229 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 MKNK2Q9HBH9 465 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 GJD2Q9UKL4 321 aa19.47■□□□□ 0.71
LSM1-201ENST00000311351 COL11A1P12107 1806 aaPredicted RBP19.46■□□□□ 0.71
LSM1-201ENST00000311351 TRIM6-TRIM34B2RNG4 842 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 INHAP05111 366 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 CCL5P13501 91 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 UBXN2AP68543 259 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 PPP4R3CPQ6ZMV5 832 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 RILPL2Q969X0 211 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 KANSL2Q9H9L4 492 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 BTBD7Q9P203 1132 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 RABGAP1Q9Y3P9 1069 aa19.46■□□□□ 0.71
LSM1-201ENST00000311351 PPARAQ07869 468 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 NMIQ13287 307 aaPredicted RBP19.45■□□□□ 0.7
LSM1-201ENST00000311351 LBX2Q6XYB7 198 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 PXYLP1Q8TE99 480 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 LPAR1Q92633 364 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 SHISA4Q96DD7 197 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 UNC93B1Q9H1C4 597 aa19.45■□□□□ 0.7
LSM1-201ENST00000311351 MAPK4P31152 587 aa19.44■□□□□ 0.7
LSM1-201ENST00000311351 GPR142Q7Z601 462 aa19.44■□□□□ 0.7
LSM1-201ENST00000311351 ZNF589Q86UQ0 364 aaPredicted RBP19.44■□□□□ 0.7
LSM1-201ENST00000311351 CCAR1Q8IX12 1150 aaKnown RBP19.44■□□□□ 0.7
LSM1-201ENST00000311351 RNF208Q9H0X6 261 aa19.44■□□□□ 0.7
LSM1-201ENST00000311351 OSBPL3Q9H4L5 887 aa19.44■□□□□ 0.7
LSM1-201ENST00000311351 HELLSQ9NRZ9 838 aa19.44■□□□□ 0.7
LSM1-201ENST00000311351 WDR46O15213 610 aaKnown RBP19.43■□□□□ 0.7
LSM1-201ENST00000311351 RAD21O60216 631 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 CYP2B6P20813 491 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 COG2Q14746 738 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 SAMD1Q6SPF0 538 aaPredicted RBP19.43■□□□□ 0.7
LSM1-201ENST00000311351 PLEKHH3Q7Z736 793 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 SOCS4Q8WXH5 440 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 ATG4CQ96DT6 458 aa19.43■□□□□ 0.7
LSM1-201ENST00000311351 IGKV6D-41A0A0C4DH26 115 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 FLOT1O75955 427 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 CTDSPL2Q05D32 466 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 TRIM32Q13049 653 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 WDR78Q5VTH9 848 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 TRIB2Q92519 343 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 NUDT12Q9BQG2 462 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 CWC22Q9HCG8 908 aaKnown RBP19.42■□□□□ 0.7
LSM1-201ENST00000311351 GOPCQ9HD26 462 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 FBXO28Q9NVF7 368 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 PLIN4Q96Q06 1357 aa19.42■□□□□ 0.7
LSM1-201ENST00000311351 HMGCRP04035 888 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 GJB1P08034 283 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 PDE4AP27815 886 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 DSG3P32926 999 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 CCNA1P78396 465 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 MCMDC2Q4G0Z9 681 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 FAM47AQ5JRC9 791 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 FAM83BQ5T0W9 1011 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 ZNF444Q8N0Y2 327 aaPredicted RBP19.41■□□□□ 0.7
LSM1-201ENST00000311351 CEP95Q96GE4 821 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 NUP88Q99567 741 aaPredicted RBP19.41■□□□□ 0.7
LSM1-201ENST00000311351 ZNF287Q9HBT7 754 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 NYAP2Q9P242 653 aa19.41■□□□□ 0.7
LSM1-201ENST00000311351 ZNF236Q9UL36 1845 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 SLC3A2P08195 630 aaKnown RBP19.4■□□□□ 0.7
LSM1-201ENST00000311351 PDE4BQ07343 736 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 MORN1Q5T089 497 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 USP6NLQ92738 828 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 MOV10L1Q9BXT6 1211 aaKnown RBP19.4■□□□□ 0.7
LSM1-201ENST00000311351 INCENPQ9NQS7 918 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 HOXC10Q9NYD6 342 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.4■□□□□ 0.7
LSM1-201ENST00000311351 TACC3Q9Y6A5 838 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 CCDC171Q6TFL3 1326 aa19.4■□□□□ 0.7
LSM1-201ENST00000311351 LAMA4Q16363 1823 aa19.39■□□□□ 0.7
LSM1-201ENST00000311351 NDUFB10O96000 172 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 SDSP20132 328 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 GJA8P48165 433 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 CCL14Q16627 93 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 LRRC47Q8N1G4 583 aaKnown RBP19.39■□□□□ 0.69
LSM1-201ENST00000311351 U2AF1L4Q8WU68 220 aaKnown RBP19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms