RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	ARO9	P38840	513 aa	Predicted RBP	5.45	□□□□□ -1.54
RRP40	YOL142W	LNP1	P38878	278 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	RRP8	P38961	392 aa	Known RBP	5.45	□□□□□ -1.54
RRP40	YOL142W	VPS8	P39702	1274 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	ARB1	P40024	610 aa	Known RBP	5.45	□□□□□ -1.54
RRP40	YOL142W	LAS21	P40367	830 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	COG2	P53271	262 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	VPS64	Q03944	604 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	HRD3	Q05787	833 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	BSP1	Q06604	576 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	CYK3	Q07533	885 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	YDL144C	Q07589	356 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	RTT109	Q07794	436 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	YER175W-A	Q8TGU4	54 aa		5.45	□□□□□ -1.54
RRP40	YOL142W	RPP0	P05317	312 aa	Known RBP	5.44	□□□□□ -1.54
RRP40	YOL142W	RMT2	Q03305	412 aa		5.44	□□□□□ -1.54
RRP40	YOL142W	CRF1	Q04930	467 aa		5.44	□□□□□ -1.54
RRP40	YOL142W	SPN1	Q06505	410 aa	Predicted RBP	5.44	□□□□□ -1.54
RRP40	YOL142W	ALE1	Q08548	619 aa		5.44	□□□□□ -1.54
RRP40	YOL142W	AFT2	Q08957	416 aa		5.44	□□□□□ -1.54
RRP40	YOL142W	FAS2	P19097	1887 aa	Known RBP	5.43	□□□□□ -1.54
RRP40	YOL142W	PTP1	P25044	335 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	RRP43	P25359	394 aa	Predicted RBP	5.43	□□□□□ -1.54
RRP40	YOL142W	BEM3	P32873	1128 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	BPL1	P48445	690 aa	Predicted RBP	5.43	□□□□□ -1.54
RRP40	YOL142W	AIM6	Q07716	390 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	YDL242W	Q07746	117 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	LCB4	Q12246	624 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	YLR111W	Q12528	110 aa		5.43	□□□□□ -1.54
RRP40	YOL142W	GAL1	P04385	528 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	KGD2	P19262	463 aa	Predicted RBP	5.42	□□□□□ -1.54
RRP40	YOL142W	SUI2	P20459	304 aa	Known RBP	5.42	□□□□□ -1.54
RRP40	YOL142W	STT3	P39007	718 aa	Known RBP	5.42	□□□□□ -1.54
RRP40	YOL142W	RAD26	P40352	1085 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	ULP2	P40537	1034 aa	Predicted RBP	5.42	□□□□□ -1.54
RRP40	YOL142W	NMD5	P46970	1048 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	NET1	P47035	1189 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	TEP1	P53916	434 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	YML053C	Q04978	212 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	MLC2	Q06580	163 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	BUG1	Q12191	341 aa		5.42	□□□□□ -1.54
RRP40	YOL142W	FRD1	P32614	470 aa	Known RBP	5.41	□□□□□ -1.54
RRP40	YOL142W	SAP1	P39955	897 aa	Known RBP	5.41	□□□□□ -1.54
RRP40	YOL142W	VPS27	P40343	622 aa	Known RBP	5.41	□□□□□ -1.54
RRP40	YOL142W	QRI7	P43122	407 aa		5.41	□□□□□ -1.54
RRP40	YOL142W	ESF2	P53743	316 aa	Known RBP	5.41	□□□□□ -1.54
RRP40	YOL142W	BRE1	Q07457	700 aa	Known RBP	5.41	□□□□□ -1.54
RRP40	YOL142W	NYV1	Q12255	253 aa		5.41	□□□□□ -1.54
RRP40	YOL142W	BI2	P03873	423 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	SIR1	P21691	654 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	HIS6	P40545	261 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	TAN1	P53072	289 aa	Predicted RBP	5.4	□□□□□ -1.54
RRP40	YOL142W	MDG1	P53885	366 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	MOT3	P54785	490 aa	Known RBP	5.4	□□□□□ -1.54
RRP40	YOL142W	PLM2	Q04383	521 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	ICL2	Q12031	575 aa		5.4	□□□□□ -1.54
RRP40	YOL142W	PNO1	Q99216	274 aa	Known RBP	5.4	□□□□□ -1.54
RRP40	YOL142W	ATP4	P05626	244 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	PTP2	P29461	750 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	PRS1	P32895	427 aa	Known RBP	5.39	□□□□□ -1.55
RRP40	YOL142W	CIR1	P42940	261 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	YPL071C	Q02864	156 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	RSC9	Q03124	581 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	SSP2	Q08646	371 aa		5.39	□□□□□ -1.55
RRP40	YOL142W	PRS5	Q12265	496 aa	Known RBP	5.39	□□□□□ -1.55
RRP40	YOL142W	MSS18	P08593	268 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	URE2	P23202	354 aa	Known RBP	5.38	□□□□□ -1.55
RRP40	YOL142W	KES1	P35844	434 aa	Known RBP	5.38	□□□□□ -1.55
RRP40	YOL142W	APM3	P38153	483 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	PSA1	P41940	361 aa	Known RBP	5.38	□□□□□ -1.55
RRP40	YOL142W	SNO3	P43544	222 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	ZDS2	P54786	942 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	TPO3	Q06451	622 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	RIX7	Q07844	837 aa	Known RBP	5.38	□□□□□ -1.55
RRP40	YOL142W	CDC45	Q08032	650 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	YOL057W	Q08225	711 aa		5.38	□□□□□ -1.55
RRP40	YOL142W	FIG2	P25653	1609 aa		5.37	□□□□□ -1.55
RRP40	YOL142W	CAB2	P40506	365 aa		5.37	□□□□□ -1.55
RRP40	YOL142W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	5.37	□□□□□ -1.55	not detected
RRP40	YOL142W	YNL058C	P53947	316 aa		5.37	□□□□□ -1.55
RRP40	YOL142W	ERG13	P54839	491 aa	Known RBP	5.37	□□□□□ -1.55
RRP40	YOL142W	AAT1	Q01802	451 aa		5.37	□□□□□ -1.55
RRP40	YOL142W	EIS1	Q05050	843 aa	Known RBP	5.37	□□□□□ -1.55
RRP40	YOL142W	RVB2	Q12464	471 aa	Known RBP	5.37	□□□□□ -1.55
RRP40	YOL142W	YBR255C-A	Q3E776	120 aa		5.37	□□□□□ -1.55
RRP40	YOL142W	PIF1	P07271	859 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	POL3	P15436	1097 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	MAK32	P23060	363 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	FTH1	P38310	465 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	IMD2	P38697	523 aa	Known RBP	5.36	□□□□□ -1.55
RRP40	YOL142W	YFR016C	P43597	1233 aa	Known RBP	5.36	□□□□□ -1.55
RRP40	YOL142W	YJR008W	P47085	338 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	IMD3	P50095	523 aa	Known RBP	5.36	□□□□□ -1.55
RRP40	YOL142W	GLO1	P50107	326 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	IDP3	P53982	420 aa	Known RBP	5.36	□□□□□ -1.55
RRP40	YOL142W	STP1	Q00947	519 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	RAD34	Q06665	692 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	IWR1	Q07532	353 aa	Predicted RBP	5.36	□□□□□ -1.55
RRP40	YOL142W	SWI1	P09547	1314 aa		5.36	□□□□□ -1.55
RRP40	YOL142W	GSC2	P40989	1895 aa		5.36	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms