RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	ERG4	P25340	473 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	CDC10	P25342	322 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	HRR25	P29295	494 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	HXT4	P32467	576 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	GCG1	P32656	232 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	DEF1	P35732	738 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	SWH1	P35845	1188 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	RIO2	P40160	425 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	IRC24	P40580	263 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	RSC8	P43609	557 aa	Known RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	TAF1	P46677	1066 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	RTS3	P53289	263 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	ADY4	Q05955	493 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	AIM39	Q08223	395 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	SDH5	Q08230	162 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	YOR378W	Q08902	515 aa		4.81	□□□□□ -1.64
EAR1	YMR171C	KEL3	Q08979	651 aa	Predicted RBP	4.81	□□□□□ -1.64
EAR1	YMR171C	ERG20	P08524	352 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	PRP16	P15938	1071 aa	Predicted RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	MF(ALPHA)2	P32435	120 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	SEC6	P32844	805 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	FMO1	P38866	432 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	BUD8	P41698	603 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	BIT61	P47041	543 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	KAP114	P53067	1004 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	ECI1	Q05871	280 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	RGC1	Q06108	1083 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	VIP1	Q06685	1146 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	NGL1	Q08213	363 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	NUC1	P08466	329 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	SRP54	P20424	541 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	ISY1	P21374	235 aa	Predicted RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	SMY1	P32364	656 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	SWE1	P32944	819 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	LOS1	P33418	1100 aa	Predicted RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	KTR4	P38131	464 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	PPS1	P38148	807 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	CCT2	P39076	527 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	COS5	P47187	383 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	YGR021W	P53212	290 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	SEC5	P89102	971 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	GIR2	Q03768	265 aa	Predicted RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	VBA4	Q04602	768 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	CSR1	Q06705	408 aa	Known RBP	4.8	□□□□□ -1.64
EAR1	YMR171C	IRC13	Q08630	104 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	FRE5	Q08908	694 aa		4.8	□□□□□ -1.64
EAR1	YMR171C	SST2	P11972	698 aa	Known RBP	4.79	□□□□□ -1.64
EAR1	YMR171C	PMR1	P13586	950 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	TUP1	P16649	713 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
EAR1	YMR171C	PEX1	P24004	1043 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	PWP2	P25635	923 aa	Known RBP	4.79	□□□□□ -1.64
EAR1	YMR171C	RCK2	P38623	610 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	VPS45	P38932	577 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	NUP60	P39705	539 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	MRX1	P40050	688 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	YJL163C	P46996	555 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	DAS1	P47005	663 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	ILM1	P47155	203 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	LSB1	P53281	241 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	JJJ1	P53863	590 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	MFM1	Q02783	413 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	YML119W	Q03208	357 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	PRP3	Q03338	469 aa	Predicted RBP	4.79	□□□□□ -1.64
EAR1	YMR171C	YMR018W	Q04364	514 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	RIX7	Q07844	837 aa	Known RBP	4.79	□□□□□ -1.64
EAR1	YMR171C	MLH2	Q07980	695 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	YLR040C	Q07988	224 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	MED1	Q12321	566 aa		4.79	□□□□□ -1.64
EAR1	YMR171C	ARG4	P04076	463 aa	Predicted RBP	4.78	□□□□□ -1.64
EAR1	YMR171C	ATP4	P05626	244 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	DGR2	P32330	852 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	RAD5	P32849	1169 aa	Predicted RBP	4.78	□□□□□ -1.64
EAR1	YMR171C	NIC96	P34077	839 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	SDS3	P40505	327 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	IRC5	P43610	853 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	TAF4	P50105	388 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	UBC11	P52492	156 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	ZPR1	P53303	486 aa	Known RBP	4.78	□□□□□ -1.64
EAR1	YMR171C	AIM33	Q04516	312 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	DIA2	Q08496	732 aa	Predicted RBP	4.78	□□□□□ -1.64
EAR1	YMR171C	TCO89	Q08921	799 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	TAF10	Q12030	206 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	POM34	Q12445	299 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	SEY1	Q99287	776 aa		4.78	□□□□□ -1.64
EAR1	YMR171C	ALG7	P07286	448 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	YEL076C-A	P0CX16	216 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	YLR464W	P0CX17	216 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	PRE8	P23639	250 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	ILV6	P25605	309 aa	Known RBP	4.77	□□□□□ -1.65
EAR1	YMR171C	PMI40	P29952	429 aa	Known RBP	4.77	□□□□□ -1.65
EAR1	YMR171C	MVD1	P32377	396 aa	Known RBP	4.77	□□□□□ -1.65
EAR1	YMR171C	SWI3	P32591	825 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	BLI1	P35727	113 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	HEL1	P36113	551 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	RPC37	P36121	282 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	PFF1	P38244	976 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	SRP68	P38687	599 aa	Known RBP	4.77	□□□□□ -1.65
EAR1	YMR171C	GAA1	P39012	614 aa		4.77	□□□□□ -1.65
EAR1	YMR171C	SPC72	P39723	622 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 39.3 ms