RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MAN1A2O60476 641 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 VAV2P52735 878 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 STRN3Q13033 797 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TBCCQ15814 346 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 EAPPQ56P03 285 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ANKRD24Q8TF21 1146 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SEC62Q99442 399 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PPP1R12CQ9BZL4 782 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CHMP2BQ9UQN3 213 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KIF20BQ96Q89 1820 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PRPF6O94906 941 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 POMCP01189 267 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MX1P20591 662 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ARL4CP56559 192 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PTK2BQ14289 1009 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 IFT20Q8IY31 132 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 FAM13CQ8NE31 585 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 EXOC6Q8TAG9 804 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 AFAP1L1Q8TED9 768 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KIFAP3Q92845 792 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 NUP88Q99567 741 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 INTS2Q9H0H0 1204 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 IRF2BPLQ9H1B7 796 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 LARSQ9P2J5 1176 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF212Q9UDV6 495 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TRPM6Q9BX84 2022 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CNTLNQ9NXG0 1405 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DPYSL4O14531 572 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TBCAO75347 108 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 YEATS4O95619 227 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 GNAQP50148 359 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TMED1Q13445 227 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DHX34Q14147 1143 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MEI1Q5TIA1 1274 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGAP24Q8N264 748 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF713Q8N859 430 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC124Q96CT7 223 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PTPDC1A2A3K4 754 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8AA7E2F4 631 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 H7C1W4 665 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SLC8A1P32418 973 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZSCAN23Q3MJ62 389 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CYB5D1Q6P9G0 228 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC88AQ3V6T2 1871 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CACNA1AO00555 2505 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 WDR87Q6ZQQ6 2873 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 NCAM2O15394 837 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PHBP35232 272 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CHAMP1Q96JM3 812 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SELENOSQ9BQE4 189 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM62Q9BVG3 475 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DHX36Q9H2U1 1008 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 Q9H521 79 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 INSRP06213 1382 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGAP35Q9NRY4 1499 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MYBBP1AQ9BQG0 1328 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RALGAPA1Q6GYQ0 2036 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGEF9O43307 516 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SEC24BO95487 1268 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RECQLP46063 649 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 YARSP54577 528 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SREBF2Q12772 1141 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DDB1Q16531 1140 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RNF219Q5W0B1 726 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KANK3Q6NY19 840 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SHQ1Q6PI26 577 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DHX32Q7L7V1 743 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RETREG2Q8NC44 543 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TMX1Q9H3N1 280 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF215Q9UL58 517 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KIF21AQ7Z4S6 1674 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC189A1A4V9 331 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 KLHL41O60662 606 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ARL4DP49703 201 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PSMD7P51665 324 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZBTB41Q5SVQ8 909 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 UIMC1Q96RL1 719 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MAP10Q9P2G4 905 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MAP3K15Q6ZN16 1313 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 DHX29Q7Z478 1369 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 OPHN1O60890 802 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RLBP1P12271 317 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SNCBQ16143 134 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TMEM132EQ6IEE7 984 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 LYSMD3Q7Z3D4 306 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 SIX6OS1Q8N1H7 587 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 HPS3Q969F9 1004 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 MCUR1Q96AQ8 359 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TADA1Q96BN2 335 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ADPGKQ9BRR6 497 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 BICC1Q9H694 974 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 LGR6Q9HBX8 967 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PCDHB9Q9Y5E1 797 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CTAGE9A4FU28 777 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 RAB11FIP3O75154 756 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 PPP6R2O75170 966 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 GNAT2P19087 354 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 YWHAEP62258 255 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms