RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 KBTBD3Q8NAB2 608 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 PXYLP1Q8TE99 480 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 DIS3LQ8TF46 1054 aaKnown RBP12.63□□□□□ -0.39
LIG3-212ENST00000590181 CCDC17Q96LX7 622 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 RWDD1Q9H446 243 aaPredicted RBP12.63□□□□□ -0.39
LIG3-212ENST00000590181 ZNF287Q9HBT7 754 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 STAP2Q9UGK3 403 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 FAM110CQ1W6H9 321 aa12.62□□□□□ -0.39
LIG3-212ENST00000590181 PAWRQ96IZ0 340 aaKnown RBP12.62□□□□□ -0.39
LIG3-212ENST00000590181 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG3-212ENST00000590181 DCP1AQ9NPI6 582 aaPredicted RBP12.62□□□□□ -0.39
LIG3-212ENST00000590181 MCM9Q9NXL9 1143 aa12.62□□□□□ -0.39
LIG3-212ENST00000590181 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.62□□□□□ -0.39
LIG3-212ENST00000590181 PCDHB15Q9Y5E8 787 aa12.62□□□□□ -0.39
LIG3-212ENST00000590181 LAMA2P24043 3122 aaKnown RBP12.61□□□□□ -0.39
LIG3-212ENST00000590181 GABPAQ06546 454 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 ABCB5Q2M3G0 1257 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 USP17L2Q6R6M4 530 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 NECAB2Q7Z6G3 386 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 CCDC84Q86UT8 332 aaPredicted RBP12.61□□□□□ -0.39
LIG3-212ENST00000590181 ANKRD13CQ8N6S4 541 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 COA7Q96BR5 231 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 CRISPLD2Q9H0B8 497 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 SH2D4AQ9H788 454 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 ZBTB21Q9ULJ3 1066 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 ZMYND8Q9ULU4 1186 aaPredicted RBP12.61□□□□□ -0.39
LIG3-212ENST00000590181 NDUFB9Q9Y6M9 179 aa12.61□□□□□ -0.39
LIG3-212ENST00000590181 RNF113AO15541 343 aaKnown RBP12.6□□□□□ -0.39
LIG3-212ENST00000590181 HMGCRP04035 888 aa12.6□□□□□ -0.39
LIG3-212ENST00000590181 MNX1P50219 401 aaPredicted RBP12.6□□□□□ -0.39
LIG3-212ENST00000590181 TREML2Q5T2D2 321 aa12.6□□□□□ -0.39
LIG3-212ENST00000590181 C12orf42Q96LP6 360 aa12.6□□□□□ -0.39
LIG3-212ENST00000590181 KIAA1683Q9H0B3 1180 aa12.6□□□□□ -0.39
LIG3-212ENST00000590181 DNAJC18Q9H819 358 aa12.6□□□□□ -0.39
LIG3-212ENST00000590181 ARPP21Q9UBL0 812 aaPredicted RBP12.6□□□□□ -0.39
LIG3-212ENST00000590181 SAP30BPQ9UHR5 308 aaKnown RBP12.6□□□□□ -0.39
LIG3-212ENST00000590181 DNAH12Q6ZR08 3092 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 MYH8P13535 1937 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 SLURP2P0DP57 97 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 MX1P20591 662 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 HMGCS2P54868 508 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 IRX3P78415 501 aaPredicted RBP12.59□□□□□ -0.39
LIG3-212ENST00000590181 SBK1Q52WX2 424 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 TMEM179Q6ZVK1 233 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 DEFB123Q8N688 67 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 ANKLE1Q8NAG6 615 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 APPBP2Q92624 585 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 GDF15Q99988 308 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 NACAP1Q9BZK3 213 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 MORF4L1Q9UBU8 362 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 NAV1Q8NEY1 1877 aa12.59□□□□□ -0.39
LIG3-212ENST00000590181 LTBP2Q14767 1821 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 FAM196BA6NMK8 535 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L15C9J2P7 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L13C9JLJ4 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L11C9JVI0 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L18D6R9N7 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L22D6RA61 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L17D6RBQ6 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L19D6RCP7 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L20D6RJB6 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 SMARCA5O60264 1052 aaPredicted RBP12.58□□□□□ -0.4
LIG3-212ENST00000590181 MBD4O95243 580 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 GH2P01242 217 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 SYN1P17600 705 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 BMP8BP34820 402 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 PLCD1P51178 756 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 USP17L24Q0WX57 530 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 PPP4R3BQ5MIZ7 849 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 C12orf60Q5U649 245 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 Q7L0L9 218 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 TRMT44Q8IYL2 757 aaKnown RBP12.58□□□□□ -0.4
LIG3-212ENST00000590181 LCORLQ8N3X6 602 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 LPAR1Q92633 364 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 ASCC2Q9H1I8 757 aaPredicted RBP12.58□□□□□ -0.4
LIG3-212ENST00000590181 HOXC10Q9NYD6 342 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 SLC4A4Q9Y6R1 1079 aa12.58□□□□□ -0.4
LIG3-212ENST00000590181 SHMT1P34896 483 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 MAGEA10P43363 369 aaPredicted RBP12.57□□□□□ -0.4
LIG3-212ENST00000590181 CCNA1P78396 465 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 MTMR2Q13614 643 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 RRP1BQ14684 758 aaKnown RBP12.57□□□□□ -0.4
LIG3-212ENST00000590181 ANKRD45Q5TZF3 282 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 GPR153Q6NV75 609 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 LBX2Q6XYB7 198 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 GPRC5AQ8NFJ5 357 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 EVI5LQ96CN4 794 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 YTHDC1Q96MU7 727 aaKnown RBP12.57□□□□□ -0.4
LIG3-212ENST00000590181 STRBPQ96SI9 672 aaKnown RBP12.57□□□□□ -0.4
LIG3-212ENST00000590181 CRBNQ96SW2 442 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 ARMT1Q9H993 441 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 KANSL2Q9H9L4 492 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 SYNPO2Q9UMS6 1093 aa12.57□□□□□ -0.4
LIG3-212ENST00000590181 PATL2C9JE40 543 aaKnown RBP12.56□□□□□ -0.4
LIG3-212ENST00000590181 USP17L12C9JPN9 530 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 USP17L21D6R901 530 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 SLC3A2P08195 630 aaKnown RBP12.56□□□□□ -0.4
LIG3-212ENST00000590181 MAPK4P31152 587 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 TRIM32Q13049 653 aa12.56□□□□□ -0.4
LIG3-212ENST00000590181 RAB3GAP1Q15042 981 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms