RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-231ENST00000561395 USP17L3A6NCW0 530 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 USP17L4A6NCW7 530 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 BAG3O95817 575 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 PPP4CP60510 307 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 FGD1P98174 961 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 CTDSPL2Q05D32 466 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 PPARAQ07869 468 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 NBR1Q14596 966 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 AKNAD1Q5T1N1 836 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 USP17L1Q7RTZ2 530 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 PODNQ7Z5L7 613 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 APOBEC3FQ8IUX4 373 aaKnown RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 SLF2Q8IX21 1173 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 NECAB1Q8N987 351 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 DPF3Q92784 378 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 TNPO1Q92973 898 aaKnown RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 GTF3C6Q969F1 213 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 FAM163AQ96GL9 167 aaPredicted RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 NOL10Q9BSC4 688 aaKnown RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 RNF41Q9H4P4 317 aaPredicted RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 DCP1AQ9NPI6 582 aaPredicted RBP8.84□□□□□ -0.99
TPM1-231ENST00000561395 SMC3Q9UQE7 1217 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 TACC3Q9Y6A5 838 aa8.84□□□□□ -0.99
TPM1-231ENST00000561395 MYH1P12882 1939 aa8.84□□□□□ -1
TPM1-231ENST00000561395 GPR75-ASB3A0A0A6YYF3 556 aa8.83□□□□□ -1
TPM1-231ENST00000561395 SOX1O00570 391 aaPredicted RBP8.83□□□□□ -1
TPM1-231ENST00000561395 SH2B2O14492 632 aaPredicted RBP8.83□□□□□ -1
TPM1-231ENST00000561395 PFKFB2O60825 505 aa8.83□□□□□ -1
TPM1-231ENST00000561395 BTDP43251 543 aa8.83□□□□□ -1
TPM1-231ENST00000561395 EVCP57679 992 aa8.83□□□□□ -1
TPM1-231ENST00000561395 APOBRQ0VD83 1088 aa8.83□□□□□ -1
TPM1-231ENST00000561395 PKP1Q13835 747 aa8.83□□□□□ -1
TPM1-231ENST00000561395 GSE1Q14687 1217 aa8.83□□□□□ -1
TPM1-231ENST00000561395 ARHGEF6Q15052 776 aa8.83□□□□□ -1
TPM1-231ENST00000561395 OTUD7BQ6GQQ9 843 aa8.83□□□□□ -1
TPM1-231ENST00000561395 CTR9Q6PD62 1173 aa8.83□□□□□ -1
TPM1-231ENST00000561395 MFSD6Q6ZSS7 791 aa8.83□□□□□ -1
TPM1-231ENST00000561395 CYB5R4Q7L1T6 521 aa8.83□□□□□ -1
TPM1-231ENST00000561395 CHST3Q7LGC8 479 aa8.83□□□□□ -1
TPM1-231ENST00000561395 CERS5Q8N5B7 392 aa8.83□□□□□ -1
TPM1-231ENST00000561395 NKX2-3Q8TAU0 364 aa8.83□□□□□ -1
TPM1-231ENST00000561395 SH3RF3Q8TEJ3 882 aaPredicted RBP8.83□□□□□ -1
TPM1-231ENST00000561395 FBXW7Q969H0 707 aa8.83□□□□□ -1
TPM1-231ENST00000561395 SHISA4Q96DD7 197 aa8.83□□□□□ -1
TPM1-231ENST00000561395 SLC10A4Q96EP9 437 aa8.83□□□□□ -1
TPM1-231ENST00000561395 ZNF274Q96GC6 653 aaPredicted RBP8.83□□□□□ -1
TPM1-231ENST00000561395 CLMNQ96JQ2 1002 aa8.83□□□□□ -1
TPM1-231ENST00000561395 KRT23Q9C075 422 aa8.83□□□□□ -1
TPM1-231ENST00000561395 ARPP21Q9UBL0 812 aaPredicted RBP8.83□□□□□ -1
TPM1-231ENST00000561395 ZDHHC9Q9Y397 364 aa8.83□□□□□ -1
TPM1-231ENST00000561395 ROBO3Q96MS0 1386 aa8.83□□□□□ -1
TPM1-231ENST00000561395 CYP2D7A0A087X1C5 515 aa8.82□□□□□ -1
TPM1-231ENST00000561395 MINDY4BA8MYZ0 360 aa8.82□□□□□ -1
TPM1-231ENST00000561395 B4E1Z4 1266 aa8.82□□□□□ -1
TPM1-231ENST00000561395 BRD1O95696 1058 aa8.82□□□□□ -1
TPM1-231ENST00000561395 FGRP09769 529 aa8.82□□□□□ -1
TPM1-231ENST00000561395 PCP11498 1178 aaKnown RBP8.82□□□□□ -1
TPM1-231ENST00000561395 PLCG2P16885 1265 aa8.82□□□□□ -1
TPM1-231ENST00000561395 GJB2P29033 226 aa8.82□□□□□ -1
TPM1-231ENST00000561395 FKBP1AP62942 108 aaKnown RBP8.82□□□□□ -1
TPM1-231ENST00000561395 SCRN1Q12765 414 aa8.82□□□□□ -1
TPM1-231ENST00000561395 STK3Q13188 491 aa8.82□□□□□ -1
TPM1-231ENST00000561395 MAP3K11Q16584 847 aa8.82□□□□□ -1
TPM1-231ENST00000561395 SBK1Q52WX2 424 aa8.82□□□□□ -1
TPM1-231ENST00000561395 STRIP1Q5VSL9 837 aa8.82□□□□□ -1
TPM1-231ENST00000561395 CLEC17AQ6ZS10 378 aa8.82□□□□□ -1
TPM1-231ENST00000561395 OGFOD1Q8N543 542 aa8.82□□□□□ -1
TPM1-231ENST00000561395 SH3TC2Q8TF17 1288 aa8.82□□□□□ -1
TPM1-231ENST00000561395 LRCH3Q96II8 777 aa8.82□□□□□ -1
TPM1-231ENST00000561395 TMEM87BQ96K49 555 aa8.82□□□□□ -1
TPM1-231ENST00000561395 MXD3Q9BW11 206 aa8.82□□□□□ -1
TPM1-231ENST00000561395 TSPYL2Q9H2G4 693 aaPredicted RBP8.82□□□□□ -1
TPM1-231ENST00000561395 INCENPQ9NQS7 918 aa8.82□□□□□ -1
TPM1-231ENST00000561395 GPHNQ9NQX3 736 aaPredicted RBP8.82□□□□□ -1
TPM1-231ENST00000561395 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.82□□□□□ -1
TPM1-231ENST00000561395 DAGLAQ9Y4D2 1042 aa8.82□□□□□ -1
TPM1-231ENST00000561395 KLF18A0A0U1RQI7 1052 aa8.81□□□□□ -1
TPM1-231ENST00000561395 A0A1W2PPC1 479 aa8.81□□□□□ -1
TPM1-231ENST00000561395 GOLGA8BA8MQT2 603 aa8.81□□□□□ -1
TPM1-231ENST00000561395 USP17L12C9JPN9 530 aa8.81□□□□□ -1
TPM1-231ENST00000561395 USP17L21D6R901 530 aa8.81□□□□□ -1
TPM1-231ENST00000561395 SMIM22K7EJ46 135 aa8.81□□□□□ -1
TPM1-231ENST00000561395 KDM4AO75164 1064 aa8.81□□□□□ -1
TPM1-231ENST00000561395 WDHD1O75717 1129 aaPredicted RBP8.81□□□□□ -1
TPM1-231ENST00000561395 CYP2D6P10635 497 aa8.81□□□□□ -1
TPM1-231ENST00000561395 PDIA3P30101 505 aaKnown RBP8.81□□□□□ -1
TPM1-231ENST00000561395 MCM4P33991 863 aa8.81□□□□□ -1
TPM1-231ENST00000561395 GJA5P36382 358 aa8.81□□□□□ -1
TPM1-231ENST00000561395 USP5P45974 858 aa8.81□□□□□ -1
TPM1-231ENST00000561395 MMP14P50281 582 aa8.81□□□□□ -1
TPM1-231ENST00000561395 RHBDL3P58872 404 aa8.81□□□□□ -1
TPM1-231ENST00000561395 DACT2Q5SW24 774 aa8.81□□□□□ -1
TPM1-231ENST00000561395 TEX11Q8IYF3 940 aa8.81□□□□□ -1
TPM1-231ENST00000561395 GBP4Q96PP9 640 aa8.81□□□□□ -1
TPM1-231ENST00000561395 LLPHQ9BRT6 129 aaKnown RBP8.81□□□□□ -1
TPM1-231ENST00000561395 MTA3Q9BTC8 594 aa8.81□□□□□ -1
TPM1-231ENST00000561395 LY9Q9HBG7 655 aa8.81□□□□□ -1
TPM1-231ENST00000561395 MCM9Q9NXL9 1143 aa8.81□□□□□ -1
TPM1-231ENST00000561395 BRPF3Q9ULD4 1205 aa8.81□□□□□ -1
TPM1-231ENST00000561395 TTF2Q9UNY4 1162 aaKnown RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms