RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 ZNF274Q96GC6 653 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-211ENST00000513346 MCM9Q9NXL9 1143 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 MYO1AQ9UBC5 1043 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 IGSF1Q8N6C5 1336 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 TRPM1Q7Z4N2 1603 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 KDM4FA0A1W2PPD8 638 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 ERVV-2B6SEH9 535 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 PLCG2P16885 1265 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 RXRAP19793 462 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 TAB2Q9NYJ8 693 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 ITGA6P23229 1130 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 KCNQ4P56696 695 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 ASIC1P78348 528 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 KRT40Q6A162 431 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 CACNA2D3Q8IZS8 1091 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 TRIM7Q9C029 511 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 LRRC27Q9C0I9 530 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 ABCA9Q8IUA7 1624 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 RIMBP2O15034 1052 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 CCDC24Q8N4L8 307 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 OR8K1Q8NGG5 319 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 CARD10Q9BWT7 1032 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 RIPOR2Q9Y4F9 1068 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 PTCH1Q13635 1447 aa12.55□□□□□ -0.4
TCOF1-211ENST00000513346 LOC102724159A0A0B4J2E5 919 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 LDHBP07195 334 aaKnown RBP12.54□□□□□ -0.4
TCOF1-211ENST00000513346 GOLGA8FQ08AF8 430 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 GOLGA8DPQ0D2H9 430 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 PAK1Q13153 545 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 PPP2R5AQ15172 486 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 PWP2Q15269 919 aaKnown RBP12.54□□□□□ -0.4
TCOF1-211ENST00000513346 A0A1W2PRG0 241 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 SETDB1Q15047 1291 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 VSTM4Q8IW00 320 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 CCDC26Q8TAB7 109 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 SPATS2LQ9NUQ6 558 aaKnown RBP12.54□□□□□ -0.4
TCOF1-211ENST00000513346 CCDC87Q9NVE4 849 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 TMEM51Q9NW97 253 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 A0A0D9SFI3 127 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 SMIM23A6NLE4 172 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 TRIM66O15016 1216 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 CFAP221Q4G0U5 840 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 TRIML1Q8N9V2 468 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 SEC62Q99442 399 aaKnown RBP12.54□□□□□ -0.4
TCOF1-211ENST00000513346 MAP3K4Q9Y6R4 1608 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 UNC13BO14795 1591 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 ZNF853P0CG23 659 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 PHKG2P15735 406 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 KRT2P35908 639 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 APBA1Q02410 837 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 TRAF1Q13077 416 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 TCERG1LQ5VWI1 586 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 CTNNBL1Q8WYA6 563 aaPredicted RBP12.54□□□□□ -0.4
TCOF1-211ENST00000513346 CCDC77Q9BR77 488 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 SAMM50Q9Y512 469 aa12.54□□□□□ -0.4
TCOF1-211ENST00000513346 PDE8AO60658 829 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 MUM1L1Q5H9M0 696 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 KRT27Q7Z3Y8 459 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 NOX5Q96PH1 765 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 SERTAD1Q9UHV2 236 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 HSPA1LP34931 641 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 RESTQ13127 1097 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 KBTBD3Q8NAB2 608 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 MTRF1LQ9UGC7 380 aaKnown RBP12.53□□□□□ -0.4
TCOF1-211ENST00000513346 TRIM37O94972 964 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 ARHGEF25Q86VW2 580 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 DIS3L2Q8IYB7 885 aaKnown RBP12.53□□□□□ -0.4
TCOF1-211ENST00000513346 PPFIBP2Q8ND30 876 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 NOC4LQ9BVI4 516 aaKnown RBP12.53□□□□□ -0.4
TCOF1-211ENST00000513346 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 CDC42BPBQ9Y5S2 1711 aa12.53□□□□□ -0.4
TCOF1-211ENST00000513346 PRPHP41219 470 aa12.52□□□□□ -0.4
TCOF1-211ENST00000513346 MAGEA1P43355 309 aa12.52□□□□□ -0.4
TCOF1-211ENST00000513346 BEND3Q5T5X7 828 aa12.52□□□□□ -0.4
TCOF1-211ENST00000513346 EDC3Q96F86 508 aaKnown RBP12.52□□□□□ -0.4
TCOF1-211ENST00000513346 PAIP2Q9BPZ3 127 aaKnown RBP12.52□□□□□ -0.4
TCOF1-211ENST00000513346 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.52□□□□□ -0.42e-7■■■■■ 35.6
TCOF1-211ENST00000513346 ANGEL1Q9UNK9 670 aaKnown RBP12.52□□□□□ -0.4
TCOF1-211ENST00000513346 VWA3AA6NCI4 1184 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 ARID5AQ03989 594 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 SCRN1Q12765 414 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 PPP1R7Q15435 360 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 TRIM58Q8NG06 486 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 CLIC4Q9Y696 253 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 E7EWF7 191 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 GBP1P32455 592 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 IFT88Q13099 833 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 GKAP1Q5VSY0 366 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 TTC19Q6DKK2 380 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 HEATR3Q7Z4Q2 680 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 PSMB7Q99436 277 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 PCDHA5Q9Y5H7 936 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 EPN1Q9Y6I3 576 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 KIF1CO43896 1103 aaKnown RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 POTEJP0CG39 1038 aa12.52□□□□□ -0.41
TCOF1-211ENST00000513346 RBBP5Q15291 538 aaKnown RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 N4BP2L2Q92802 583 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-211ENST00000513346 TMEM87BQ96K49 555 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms