RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 ATP8A2Q9NTI2 1148 aa14.42□□□□□ -0.1
MED28-203ENST00000503945 GJD2Q9UKL4 321 aa14.42□□□□□ -0.1
MED28-203ENST00000503945 MPHOSPH10O00566 681 aaKnown RBP14.41□□□□□ -0.1
MED28-203ENST00000503945 CAPN2P17655 700 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 LCORLQ8N3X6 602 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 DIS3LQ8TF46 1054 aaKnown RBP14.41□□□□□ -0.1
MED28-203ENST00000503945 SDR42E1Q8WUS8 393 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 ARMT1Q9H993 441 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 STAP2Q9UGK3 403 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 LOC285556D6RIA3 1793 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 PLXNB2O15031 1838 aa14.41□□□□□ -0.1
MED28-203ENST00000503945 MYO5AQ9Y4I1 1855 aaKnown RBP14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L15C9J2P7 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L13C9JLJ4 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L11C9JVI0 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L18D6R9N7 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L22D6RA61 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L17D6RBQ6 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L19D6RCP7 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L20D6RJB6 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 SHMT1P34896 483 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 HERVK_113P62684 666 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 USP17L24Q0WX57 530 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 TRIM32Q13049 653 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 GTF3C2Q8WUA4 911 aaPredicted RBP14.4□□□□□ -0.1
MED28-203ENST00000503945 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.4□□□□□ -0.1
MED28-203ENST00000503945 SWAP70Q9UH65 585 aa14.4□□□□□ -0.1
MED28-203ENST00000503945 RANBP2P49792 3224 aaKnown RBP14.4□□□□□ -0.1
MED28-203ENST00000503945 SOX1O00570 391 aaPredicted RBP14.39□□□□□ -0.11
MED28-203ENST00000503945 PRKAB2O43741 272 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 PEX10O60683 326 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 MBD4O95243 580 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 GABPAQ06546 454 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 ZYXQ15942 572 aaKnown RBP14.39□□□□□ -0.11
MED28-203ENST00000503945 SLFNL1Q499Z3 407 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 NECAB2Q7Z6G3 386 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 KIAA1683Q9H0B3 1180 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 RBPJLQ9UBG7 517 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 MORF4L1Q9UBU8 362 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 ZBTB47Q9UFB7 747 aaPredicted RBP14.39□□□□□ -0.11
MED28-203ENST00000503945 SLC4A4Q9Y6R1 1079 aa14.39□□□□□ -0.11
MED28-203ENST00000503945 SIPA1L1O43166 1804 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 CDK5RAP2Q96SN8 1893 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 USP17L12C9JPN9 530 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 USP17L21D6R901 530 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 MAPK4P31152 587 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 SEPT2Q15019 361 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 Q3C1V9 767 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 CATSPERGQ6ZRH7 1159 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 ACER1Q8TDN7 264 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 C12orf42Q96LP6 360 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 HOXC10Q9NYD6 342 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 RPTORQ8N122 1335 aa14.38□□□□□ -0.11
MED28-203ENST00000503945 HMGCRP04035 888 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 MNX1P50219 401 aaPredicted RBP14.37□□□□□ -0.11
MED28-203ENST00000503945 CCNA1P78396 465 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 LRRFIP1Q32MZ4 808 aaKnown RBP14.37□□□□□ -0.11
MED28-203ENST00000503945 C12orf60Q5U649 245 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 LRCH3Q96II8 777 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 CCDC17Q96LX7 622 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 NUDT12Q9BQG2 462 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 PAGR1Q9BTK6 254 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 PUS7LQ9H0K6 701 aaKnown RBP14.37□□□□□ -0.11
MED28-203ENST00000503945 CWC22Q9HCG8 908 aaKnown RBP14.37□□□□□ -0.11
MED28-203ENST00000503945 HMX1Q9NP08 348 aaPredicted RBP14.37□□□□□ -0.11
MED28-203ENST00000503945 PCDHB15Q9Y5E8 787 aa14.37□□□□□ -0.11
MED28-203ENST00000503945 A0A1W2PPC1 479 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 ERC2O15083 957 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 CYP2D6P10635 497 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 CYP2B6P20813 491 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 GUCY1A2P33402 732 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 ERVK-9P63128 1117 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 ERVK-24P63145 666 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 TMEM179Q6ZVK1 233 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 C7orf61Q8IZ16 206 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 KBTBD3Q8NAB2 608 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 ANKLE1Q8NAG6 615 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 DYNLL2Q96FJ2 89 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 TXNRD2Q9NNW7 524 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 RABGAP1Q9Y3P9 1069 aa14.36□□□□□ -0.11
MED28-203ENST00000503945 RNF113AO15541 343 aaKnown RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 GLRX3O76003 335 aaKnown RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 CHGBP05060 677 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 ZFYP08048 801 aaPredicted RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 CDK8P49336 464 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 RRP1P56182 461 aaKnown RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 COG2Q14746 738 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 CTR9Q6PD62 1173 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 TRIB2Q92519 343 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 STRBPQ96SI9 672 aaKnown RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 GDF15Q99988 308 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 ZMYND8Q9ULU4 1186 aaPredicted RBP14.35□□□□□ -0.11
MED28-203ENST00000503945 FOCADQ5VW36 1801 aa14.35□□□□□ -0.11
MED28-203ENST00000503945 APPP05067 770 aa14.34□□□□□ -0.11
MED28-203ENST00000503945 XRCC5P13010 732 aaKnown RBP14.34□□□□□ -0.11
MED28-203ENST00000503945 VCAM1P19320 739 aa14.34□□□□□ -0.11
MED28-203ENST00000503945 BMP8BP34820 402 aa14.34□□□□□ -0.11
MED28-203ENST00000503945 EVX2Q03828 476 aa14.34□□□□□ -0.11
MED28-203ENST00000503945 PLEKHH3Q7Z736 793 aa14.34□□□□□ -0.11
MED28-203ENST00000503945 TRMT44Q8IYL2 757 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms