RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FNBP4Q8N3X1 1017 aaPredicted RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 TNFRSF25Q93038 417 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 ATP8A2Q9NTI2 1148 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 RBM28Q9NW13 759 aaKnown RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 FANCLQ9NW38 375 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 ADAMTS3O15072 1205 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 ACTN4O43707 911 aaKnown RBP17.7■□□□□ 0.42
UPF3B-202ENST00000345865 KRT2P35908 639 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 PTPN21Q16825 1174 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 CCAR2Q8N163 923 aaKnown RBP17.7■□□□□ 0.42
UPF3B-202ENST00000345865 DDAH1O94760 285 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 USP17L8P0C7I0 530 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 GRIK5Q16478 980 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 ZNF827Q17R98 1081 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 NT5DC1Q5TFE4 455 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 RCSD1Q6JBY9 416 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 SBF2Q86WG5 1849 aa17.7■□□□□ 0.42
UPF3B-202ENST00000345865 NHSQ6T4R5 1651 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 TRIM75PA6NK02 468 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 CALM1P0DP23 149 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 CALM2P0DP24 149 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 CALM3P0DP25 149 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 XBP1P17861 261 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 NFIXQ14938 502 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 SBK1Q52WX2 424 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 EPSTI1Q96J88 318 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 MAP7D2Q96T17 732 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 CEP131Q9UPN4 1083 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 MAST2Q6P0Q8 1798 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 UBASH3AP57075 661 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 FMR1Q06787 632 aaKnown RBP eCLIP17.69■□□□□ 0.42
UPF3B-202ENST00000345865 CEP135Q66GS9 1140 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 E4F1Q66K89 784 aaPredicted RBP17.69■□□□□ 0.42
UPF3B-202ENST00000345865 OLFM4Q6UX06 510 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 MED15Q96RN5 788 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 KCND1Q9NSA2 647 aa17.69■□□□□ 0.42
UPF3B-202ENST00000345865 MKRN1Q9UHC7 482 aaKnown RBP17.69■□□□□ 0.42
UPF3B-202ENST00000345865 TMEM232C9JQI7 657 aa17.68■□□□□ 0.42
UPF3B-202ENST00000345865 HSP90AA4PQ58FG1 418 aa17.68■□□□□ 0.42
UPF3B-202ENST00000345865 GPR101Q96P66 508 aaPredicted RBP17.68■□□□□ 0.42
UPF3B-202ENST00000345865 INTS13Q9NVM9 706 aa17.68■□□□□ 0.42
UPF3B-202ENST00000345865 MCM9Q9NXL9 1143 aa17.68■□□□□ 0.42
UPF3B-202ENST00000345865 ARPP21Q9UBL0 812 aaPredicted RBP17.68■□□□□ 0.42
UPF3B-202ENST00000345865 MORC3Q14149 939 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 USP21Q9UK80 565 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 THSD7AQ9UPZ6 1657 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 SERPINC1P01008 464 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 DZIP1Q86YF9 867 aaKnown RBP17.67■□□□□ 0.42
UPF3B-202ENST00000345865 CCDC150Q8NCX0 1101 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 SPATA20Q8TB22 786 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 ZNF592Q92610 1267 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 ARID3AQ99856 593 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 ANKIB1Q9P2G1 1089 aa17.67■□□□□ 0.42
UPF3B-202ENST00000345865 LY75O60449 1722 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 TSPY2A6NKD2 308 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 SFPQP23246 707 aaKnown RBP eCLIP17.66■□□□□ 0.42
UPF3B-202ENST00000345865 PTPN14Q15678 1187 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 ZNF174Q15697 407 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 CTCFLQ8NI51 663 aaPredicted RBP17.66■□□□□ 0.42
UPF3B-202ENST00000345865 IL17RBQ9NRM6 502 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 PAXBP1Q9Y5B6 917 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 MORC2Q9Y6X9 1032 aaPredicted RBP17.66■□□□□ 0.42
UPF3B-202ENST00000345865 NPHP1O15259 732 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 RFC4P35249 363 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 DIXDC1Q155Q3 683 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 CFAP100Q494V2 611 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 SH3RF3Q8TEJ3 882 aaPredicted RBP17.66■□□□□ 0.42
UPF3B-202ENST00000345865 SMARCE1Q969G3 411 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 DHX58Q96C10 678 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 DYNLL2Q96FJ2 89 aa17.66■□□□□ 0.42
UPF3B-202ENST00000345865 HOOK1Q9UJC3 728 aaKnown RBP17.66■□□□□ 0.42
UPF3B-202ENST00000345865 CASP1P29466 404 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 GOLGA8FQ08AF8 430 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 GOLGA8DPQ0D2H9 430 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 GRAPQ13588 217 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 C12orf60Q5U649 245 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 MTERF4Q7Z6M4 381 aaKnown RBP17.65■□□□□ 0.42
UPF3B-202ENST00000345865 TRMT44Q8IYL2 757 aaKnown RBP17.65■□□□□ 0.42
UPF3B-202ENST00000345865 GRAPLQ8TC17 118 aaPredicted RBP17.65■□□□□ 0.42
UPF3B-202ENST00000345865 SYMPKQ92797 1274 aaKnown RBP17.65■□□□□ 0.42
UPF3B-202ENST00000345865 NAA30Q147X3 362 aaPredicted RBP17.65■□□□□ 0.42
UPF3B-202ENST00000345865 FAM196AQ6ZSG2 479 aa17.65■□□□□ 0.42
UPF3B-202ENST00000345865 SCG2P13521 617 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 TFAP4Q01664 338 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 TRAPPC3LQ5T215 181 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 VSTM4Q8IW00 320 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 ANKRD7Q92527 254 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 LRRC4BQ9NT99 713 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 UBAP1LF5GYI3 381 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 ZBTB22O15209 634 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 LDHBP07195 334 aaKnown RBP17.64■□□□□ 0.41
UPF3B-202ENST00000345865 ZNF18P17022 549 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 PTGDRQ13258 359 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 PFKFB3Q16875 520 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-202ENST00000345865 TTC38Q5R3I4 469 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 SPTY2D1Q68D10 685 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-202ENST00000345865 MLKLQ8NB16 471 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 CCDC112Q8NEF3 446 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 NFE2L3Q9Y4A8 694 aa17.64■□□□□ 0.41
UPF3B-202ENST00000345865 AFMP43652 599 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms