RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 AHDC1Q5TGY3 1603 aaPredicted RBP13.2□□□□□ -0.3
PTPN2-201ENST00000309660 DDX60Q8IY21 1712 aaKnown RBP13.2□□□□□ -0.3
PTPN2-201ENST00000309660 TRAPPC3LQ5T215 181 aa13.2□□□□□ -0.3
PTPN2-201ENST00000309660 SMYD4Q8IYR2 804 aaPredicted RBP13.2□□□□□ -0.3
PTPN2-201ENST00000309660 CCAR2Q8N163 923 aaKnown RBP13.2□□□□□ -0.3
PTPN2-201ENST00000309660 MAP7D2Q96T17 732 aa13.2□□□□□ -0.3
PTPN2-201ENST00000309660 KAT14Q9H8E8 782 aa13.2□□□□□ -0.3
PTPN2-201ENST00000309660 CNTNAP4Q9C0A0 1308 aa13.2□□□□□ -0.3
PTPN2-201ENST00000309660 IKBKBO14920 756 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 CNBD1Q8NA66 436 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 RASGRP4Q8TDF6 673 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 TGFBRAP1Q8WUH2 860 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 SYMPKQ92797 1274 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 SRPRBQ9Y5M8 271 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 MYH2Q9UKX2 1941 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 GOLGB1Q14789 3259 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 PHLPP1O60346 1717 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 BCL9LQ86UU0 1499 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 CDC25AP30304 524 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 FMR1Q06787 632 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 GRIK5Q16478 980 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 SLC10A5Q5PT55 438 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 MEX3CQ5U5Q3 659 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 TMTC3Q6ZXV5 915 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 MAPKAPK5Q8IW41 473 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 RASSF8Q8NHQ8 419 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 RBM28Q9NW13 759 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 USP17L3A6NCW0 530 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 USP17L4A6NCW7 530 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 PRPF3O43395 683 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 TTC38Q5R3I4 469 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 USP17L1Q7RTZ2 530 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 CCDC150Q8NCX0 1101 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 SH3RF3Q8TEJ3 882 aaPredicted RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 NOL10Q9BSC4 688 aaKnown RBP13.19□□□□□ -0.3
PTPN2-201ENST00000309660 HSD3B7Q9H2F3 369 aa13.19□□□□□ -0.3
PTPN2-201ENST00000309660 CALM1P0DP23 149 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 CALM2P0DP24 149 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 CALM3P0DP25 149 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 PTGDRQ13258 359 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 VPS72Q15906 364 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 PDCL2Q8N4E4 241 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 PHF20Q9BVI0 1012 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 IMPACTQ9P2X3 320 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 CICQ96RK0 1608 aaPredicted RBP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 SEMA3EO15041 775 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 CBFA2T2O43439 604 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 PPP4R3BQ5MIZ7 849 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 RPGRQ92834 1020 aaKnown RBP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 OSBPL5Q9H0X9 879 aaPredicted RBP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 CPVLQ9H3G5 476 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 TMX1Q9H3N1 280 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 SAMSN1Q9NSI8 373 aaKnown RBP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 ATP8A2Q9NTI2 1148 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 A0A087X0B3 334 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 GTF2F1P35269 517 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 MTA3Q9BTC8 594 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 BLZF1Q9H2G9 400 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 ARPP21Q9UBL0 812 aaPredicted RBP13.18□□□□□ -0.3
PTPN2-201ENST00000309660 PAXBP1Q9Y5B6 917 aa13.18□□□□□ -0.3
PTPN2-201ENST00000309660 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 ADAMTS3O15072 1205 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 GOLGA8HP0CJ92 632 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 FUT2Q10981 343 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 PPP2R5BQ15173 497 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 E4F1Q66K89 784 aaPredicted RBP13.17□□□□□ -0.3
PTPN2-201ENST00000309660 SYT10Q6XYQ8 523 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 AMOTL1Q8IY63 956 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 STAG2Q8N3U4 1231 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 CCDC34Q96HJ3 373 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 EP400Q96L91 3159 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 CHD4Q14839 1912 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 SCG2P13521 617 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 ZNF444Q8N0Y2 327 aaPredicted RBP13.17□□□□□ -0.3
PTPN2-201ENST00000309660 PNMA1Q8ND90 353 aa13.17□□□□□ -0.3
PTPN2-201ENST00000309660 DDAH1O94760 285 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 SPTY2D1Q68D10 685 aaPredicted RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 MTERF4Q7Z6M4 381 aaKnown RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 KIF18AQ8NI77 898 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 CPLX3Q8WVH0 158 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 CNTNAP5Q8WYK1 1306 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 UFL1O94874 794 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 RCAN1P53805 252 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 RASGRP2Q7LDG7 609 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 PLIN2Q99541 437 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 FAM237AA0A1B0GTK4 181 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 ACTN4O43707 911 aaKnown RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 TM4SF1P30408 202 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 ADKP55263 362 aaKnown RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 CBX1P83916 185 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 MDM2Q00987 491 aaPredicted RBP13.16□□□□□ -0.3
PTPN2-201ENST00000309660 HEATR3Q7Z4Q2 680 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 PPP1R13BQ96KQ4 1090 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 VAT1LQ9HCJ6 419 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 MAPK8IP1Q9UQF2 711 aa13.16□□□□□ -0.3
PTPN2-201ENST00000309660 KIF5BP33176 963 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms