RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W STE13P33894 931 aa4.57□□□□□ -1.68
SSH4YKL124W GIP1P38229 639 aa4.57□□□□□ -1.68
SSH4YKL124W PCF11P39081 626 aaPredicted RBP4.57□□□□□ -1.68
SSH4YKL124W GDH3P39708 457 aa4.57□□□□□ -1.68
SSH4YKL124W SPC72P39723 622 aa4.57□□□□□ -1.68
SSH4YKL124W EDC3P39998 551 aaKnown RBP4.57□□□□□ -1.68
SSH4YKL124W TMN3P40071 706 aa4.57□□□□□ -1.68
SSH4YKL124W YIL054WP40524 105 aa4.57□□□□□ -1.68
SSH4YKL124W RIM21P48565 533 aa4.57□□□□□ -1.68
SSH4YKL124W TAN1P53072 289 aaPredicted RBP4.57□□□□□ -1.68
SSH4YKL124W SPC105P53148 917 aa4.57□□□□□ -1.68
SSH4YKL124W CLU1Q03690 1277 aaKnown RBP4.57□□□□□ -1.68
SSH4YKL124W UTP5Q04177 643 aaKnown RBP4.57□□□□□ -1.68
SSH4YKL124W ARV1Q06541 321 aa4.57□□□□□ -1.68
SSH4YKL124W ALR1Q08269 859 aa4.57□□□□□ -1.68
SSH4YKL124W THI21Q08975 551 aa4.57□□□□□ -1.68
SSH4YKL124W DAS2Q12084 232 aa4.57□□□□□ -1.68
SSH4YKL124W ATG9Q12142 997 aa4.57□□□□□ -1.68
SSH4YKL124W TEL1P38110 2787 aa4.57□□□□□ -1.68
SSH4YKL124W MSF1P08425 469 aa4.56□□□□□ -1.68
SSH4YKL124W RPL40AP0CH08 128 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W RPL40BP0CH09 128 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W SEC23P15303 768 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W MET16P18408 261 aaPredicted RBP4.56□□□□□ -1.68
SSH4YKL124W TRX1P22217 103 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W KNS1P32350 737 aaPredicted RBP4.56□□□□□ -1.68
SSH4YKL124W PEP12P32854 288 aa4.56□□□□□ -1.68
SSH4YKL124W MRPL40P36534 297 aa4.56□□□□□ -1.68
SSH4YKL124W NCL1P38205 684 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W PIK1P39104 1066 aa4.56□□□□□ -1.68
SSH4YKL124W ATG3P40344 310 aa4.56□□□□□ -1.68
SSH4YKL124W GCD10P41814 478 aa4.56□□□□□ -1.68
SSH4YKL124W SNG1P46950 547 aa4.56□□□□□ -1.68
SSH4YKL124W VEL1P53058 206 aa4.56□□□□□ -1.68
SSH4YKL124W TRM112P53738 135 aaPredicted RBP4.56□□□□□ -1.68
SSH4YKL124W CDC55Q00362 526 aa4.56□□□□□ -1.68
SSH4YKL124W ARA2Q04212 335 aa4.56□□□□□ -1.68
SSH4YKL124W LCB5Q06147 687 aaKnown RBP4.56□□□□□ -1.68
SSH4YKL124W PUF3Q07807 879 aaKnown RBP RIP-Chip data4.56□□□□□ -1.68not detected
SSH4YKL124W SEN1Q00416 2231 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W HAP4P14064 554 aa4.55□□□□□ -1.68
SSH4YKL124W GFD2P25370 566 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W YJU3P28321 313 aa4.55□□□□□ -1.68
SSH4YKL124W HXT1P32465 570 aa4.55□□□□□ -1.68
SSH4YKL124W URA8P38627 578 aaPredicted RBP4.55□□□□□ -1.68
SSH4YKL124W BOL3P39724 118 aa4.55□□□□□ -1.68
SSH4YKL124W RTT105P40063 208 aa4.55□□□□□ -1.68
SSH4YKL124W YJR061WP40355 935 aa4.55□□□□□ -1.68
SSH4YKL124W ASG1P40467 964 aa4.55□□□□□ -1.68
SSH4YKL124W MNN11P46985 422 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W YJL132WP47014 750 aa4.55□□□□□ -1.68
SSH4YKL124W ATP22P50273 684 aaPredicted RBP4.55□□□□□ -1.68
SSH4YKL124W REX2P54964 269 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W CTR9P89105 1077 aa4.55□□□□□ -1.68
SSH4YKL124W ADI1Q03677 179 aa4.55□□□□□ -1.68
SSH4YKL124W INP2Q03824 705 aa4.55□□□□□ -1.68
SSH4YKL124W RKM2Q03942 479 aa4.55□□□□□ -1.68
SSH4YKL124W RAD33Q04231 177 aa4.55□□□□□ -1.68
SSH4YKL124W IVY1Q04934 453 aa4.55□□□□□ -1.68
SSH4YKL124W KAP95Q06142 861 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W REH1Q06709 432 aa4.55□□□□□ -1.68
SSH4YKL124W GPM3Q12326 303 aa4.55□□□□□ -1.68
SSH4YKL124W MTF2P10849 440 aa4.55□□□□□ -1.68
SSH4YKL124W ARF2P19146 181 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W DAL81P21657 970 aa4.55□□□□□ -1.68
SSH4YKL124W DBF4P32325 704 aa4.55□□□□□ -1.68
SSH4YKL124W VMA8P32610 256 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W PXA2P34230 853 aa4.55□□□□□ -1.68
SSH4YKL124W NUP120P35729 1037 aa4.55□□□□□ -1.68
SSH4YKL124W TCD2P36101 447 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W APM3P38153 483 aa4.55□□□□□ -1.68
SSH4YKL124W HIS2P38635 335 aa4.55□□□□□ -1.68
SSH4YKL124W SET5P38890 526 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W ARB1P40024 610 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W KTR7P40504 517 aa4.55□□□□□ -1.68
SSH4YKL124W AIM23P47015 356 aa4.55□□□□□ -1.68
SSH4YKL124W TCB2P48231 1178 aa4.55□□□□□ -1.68
SSH4YKL124W NNF2P53253 936 aa4.55□□□□□ -1.68
SSH4YKL124W YNL040WP53960 456 aaPredicted RBP4.55□□□□□ -1.68
SSH4YKL124W PEX13P80667 386 aa4.55□□□□□ -1.68
SSH4YKL124W ELP3Q02908 557 aaKnown RBP4.55□□□□□ -1.68
SSH4YKL124W SWA2Q06677 668 aa4.55□□□□□ -1.68
SSH4YKL124W YLR125WQ12138 136 aa4.55□□□□□ -1.68
SSH4YKL124W IZH4Q99393 312 aa4.55□□□□□ -1.68
SSH4YKL124W RED1P14291 827 aa4.54□□□□□ -1.68
SSH4YKL124W MRPL25P23369 157 aa4.54□□□□□ -1.68
SSH4YKL124W GEX1P25596 615 aa4.54□□□□□ -1.68
SSH4YKL124W CCR4P31384 837 aaKnown RBP4.54□□□□□ -1.68
SSH4YKL124W KAR9P32526 644 aa4.54□□□□□ -1.68
SSH4YKL124W ADD66P36040 267 aa4.54□□□□□ -1.68
SSH4YKL124W MIC60P36112 540 aa4.54□□□□□ -1.68
SSH4YKL124W GEX2P36173 615 aa4.54□□□□□ -1.68
SSH4YKL124W SRP68P38687 599 aaKnown RBP4.54□□□□□ -1.68
SSH4YKL124W YHR020WP38708 688 aaKnown RBP4.54□□□□□ -1.68
SSH4YKL124W BAT1P38891 393 aaKnown RBP4.54□□□□□ -1.68
SSH4YKL124W YMR124WP39523 943 aaKnown RBP4.54□□□□□ -1.68
SSH4YKL124W IRR1P40541 1150 aa4.54□□□□□ -1.68
SSH4YKL124W SAE2P46946 345 aa4.54□□□□□ -1.68
SSH4YKL124W YTP1P53584 459 aa4.54□□□□□ -1.68
SSH4YKL124W PRM1P53835 661 aa4.54□□□□□ -1.68
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms