RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W MRPL19P53875 158 aa4.53□□□□□ -1.68
PRE9YGR135W NCS2P53923 493 aaPredicted RBP4.53□□□□□ -1.68
PRE9YGR135W LEE1Q02799 301 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W UBP16Q02863 499 aa4.53□□□□□ -1.68
PRE9YGR135W YLR287CQ05881 355 aa4.53□□□□□ -1.68
PRE9YGR135W GET3Q12154 354 aaKnown RBP4.53□□□□□ -1.68
PRE9YGR135W RRG1Q12167 365 aaPredicted RBP4.53□□□□□ -1.68
PRE9YGR135W URB1P34241 1764 aaKnown RBP4.53□□□□□ -1.69
PRE9YGR135W CDC6P09119 513 aa4.52□□□□□ -1.69
PRE9YGR135W HSF1P10961 833 aa4.52□□□□□ -1.69
PRE9YGR135W CKI1P20485 582 aa4.52□□□□□ -1.69
PRE9YGR135W ARG1P22768 420 aa4.52□□□□□ -1.69
PRE9YGR135W SWI4P25302 1093 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W IMG2P25642 146 aaPredicted RBP4.52□□□□□ -1.69
PRE9YGR135W RAD16P31244 790 aa4.52□□□□□ -1.69
PRE9YGR135W SRB4P32569 687 aa4.52□□□□□ -1.69
PRE9YGR135W VMA8P32610 256 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W CBF5P33322 483 aaKnown RBP RIP-Chip data4.52□□□□□ -1.69not detected
PRE9YGR135W YHR033WP38690 423 aa4.52□□□□□ -1.69
PRE9YGR135W MIP6P38760 659 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W CRG1P38892 291 aaRIP-Chip data4.52□□□□□ -1.69not detected
PRE9YGR135W YMR147WP40218 223 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W SET2P46995 733 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W UPF3P48412 387 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W PUS4P48567 403 aaKnown RBP4.52□□□□□ -1.69
PRE9YGR135W ERO1Q03103 563 aa4.52□□□□□ -1.69
PRE9YGR135W TDA9Q04545 1251 aa4.52□□□□□ -1.69
PRE9YGR135W SPN1Q06505 410 aaPredicted RBP4.52□□□□□ -1.69
PRE9YGR135W ISA1Q07821 250 aaPredicted RBP4.52□□□□□ -1.69
PRE9YGR135W SMC6Q12749 1114 aa4.52□□□□□ -1.69
PRE9YGR135W CDC8P00572 216 aa4.51□□□□□ -1.69
PRE9YGR135W CDC37P06101 506 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W KIN2P13186 1147 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W MRPS28P21771 286 aa4.51□□□□□ -1.69
PRE9YGR135W CDC10P25342 322 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W DPH5P32469 300 aaPredicted RBP4.51□□□□□ -1.69
PRE9YGR135W YME2P32843 850 aa4.51□□□□□ -1.69
PRE9YGR135W RPS0AP32905 252 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W BMH2P34730 273 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W YKL050CP35736 922 aa4.51□□□□□ -1.69
PRE9YGR135W OLA1P38219 394 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W IFA38P38286 347 aa4.51□□□□□ -1.69
PRE9YGR135W STT3P39007 718 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W FYV8P46949 817 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W NNF2P53253 936 aa4.51□□□□□ -1.69
PRE9YGR135W PXR1P53335 271 aaPredicted RBP4.51□□□□□ -1.69
PRE9YGR135W ADA2Q02336 434 aa4.51□□□□□ -1.69
PRE9YGR135W FCP1Q03254 732 aa4.51□□□□□ -1.69
PRE9YGR135W EBS1Q03466 884 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W YKU80Q04437 629 aa4.51□□□□□ -1.69
PRE9YGR135W YLR177WQ06251 628 aa4.51□□□□□ -1.69
PRE9YGR135W YPS7Q06325 596 aa4.51□□□□□ -1.69
PRE9YGR135W IMH1Q06704 911 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W CMS1Q07897 291 aaKnown RBP4.51□□□□□ -1.69
PRE9YGR135W VHS3Q08438 674 aa4.51□□□□□ -1.69
PRE9YGR135W TRM8Q12009 286 aa4.51□□□□□ -1.69
PRE9YGR135W RTK1Q12100 620 aaPredicted RBP4.51□□□□□ -1.69
PRE9YGR135W OSM1P21375 501 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W HXT1P32465 570 aa4.5□□□□□ -1.69
PRE9YGR135W GCG1P32656 232 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W TEF4P36008 412 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W LAS1P36146 502 aaPredicted RBP4.5□□□□□ -1.69
PRE9YGR135W SAK1P38990 1142 aa4.5□□□□□ -1.69
PRE9YGR135W SSP120P39931 234 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W YER010CP40011 234 aa4.5□□□□□ -1.69
PRE9YGR135W VFA1P40080 203 aa4.5□□□□□ -1.69
PRE9YGR135W LYS14P40971 790 aa4.5□□□□□ -1.69
PRE9YGR135W GPD2P41911 440 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W AIP1P46680 615 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W ILM1P47155 203 aa4.5□□□□□ -1.69
PRE9YGR135W PSP2P50109 593 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W YGR012WP53206 393 aa4.5□□□□□ -1.69
PRE9YGR135W ADE16P54113 591 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W TIM10P87108 93 aa4.5□□□□□ -1.69
PRE9YGR135W SEC5P89102 971 aa4.5□□□□□ -1.69
PRE9YGR135W MEH1Q02205 184 aa4.5□□□□□ -1.69
PRE9YGR135W SPO19Q03029 223 aa4.5□□□□□ -1.69
PRE9YGR135W RMT2Q03305 412 aa4.5□□□□□ -1.69
PRE9YGR135W YDR132CQ03900 495 aa4.5□□□□□ -1.69
PRE9YGR135W SYF1Q04048 859 aaPredicted RBP4.5□□□□□ -1.69
PRE9YGR135W ARA2Q04212 335 aa4.5□□□□□ -1.69
PRE9YGR135W VTI1Q04338 217 aa4.5□□□□□ -1.69
PRE9YGR135W MMR1Q06324 491 aa4.5□□□□□ -1.69
PRE9YGR135W CSR1Q06705 408 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W IWR1Q07532 353 aaPredicted RBP4.5□□□□□ -1.69
PRE9YGR135W SCM3Q12334 223 aa4.5□□□□□ -1.69
PRE9YGR135W DBP10Q12389 995 aaKnown RBP4.5□□□□□ -1.69
PRE9YGR135W YLR358CO13565 187 aa4.49□□□□□ -1.69
PRE9YGR135W ARG4P04076 463 aaPredicted RBP4.49□□□□□ -1.69
PRE9YGR135W PPR1P07272 904 aaPredicted RBP4.49□□□□□ -1.69
PRE9YGR135W FUM1P08417 488 aaKnown RBP4.49□□□□□ -1.69
PRE9YGR135W PYC1P11154 1178 aaKnown RBP4.49□□□□□ -1.69
PRE9YGR135W MET8P15807 274 aa4.49□□□□□ -1.69
PRE9YGR135W ACO1P19414 778 aaKnown RBP RIP-Chip data4.49□□□□□ -1.69not detected
PRE9YGR135W MF(ALPHA)2P32435 120 aa4.49□□□□□ -1.69
PRE9YGR135W RAD5P32849 1169 aaPredicted RBP4.49□□□□□ -1.69
PRE9YGR135W DHR2P36009 735 aaPredicted RBP4.49□□□□□ -1.69
PRE9YGR135W PZF1P39933 429 aa4.49□□□□□ -1.69
PRE9YGR135W ZRG8P40021 1076 aa4.49□□□□□ -1.69
PRE9YGR135W KHA1P40309 873 aa4.49□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms