RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	SST2	P11972	698 aa	Known RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	FRS2	P15625	503 aa	Known RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	PET123	P17558	318 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	VPS33	P20795	691 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	PET309	P32522	965 aa	Predicted RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	SWE1	P32944	819 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	DHR2	P36009	735 aa	Predicted RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	MUP3	P38734	546 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	YJL193W	P39542	402 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	SAW1	P39735	261 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	RIO2	P40160	425 aa	Known RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	SPO22	P40511	975 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	CNM67	P53865	581 aa	Known RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	TLG2	Q08144	397 aa		4.55	□□□□□ -1.68
HSP42	YDR171W	DBP10	Q12389	995 aa	Known RBP	4.55	□□□□□ -1.68
HSP42	YDR171W	ADE6	P38972	1358 aa	Known RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	TUF1	P02992	437 aa	Known RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	SEC12	P11655	471 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	CBP3	P21560	335 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	TGL1	P34163	548 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	SWH1	P35845	1188 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	STB5	P38699	743 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	THI6	P41835	540 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	ASK10	P48361	1146 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	ASN1	P49089	572 aa	Known RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	VPS4	P52917	437 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	TAN1	P53072	289 aa	Predicted RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	YGL082W	P53155	381 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	DAK1	P54838	584 aa	Known RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	CEG1	Q01159	459 aa	Predicted RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	CEF1	Q03654	590 aa	Predicted RBP	4.54	□□□□□ -1.68
HSP42	YDR171W	HOF1	Q05080	669 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	PSK2	Q08217	1101 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	YPL216W	Q08964	1102 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	SEC39	Q12745	709 aa		4.54	□□□□□ -1.68
HSP42	YDR171W	SWI1	P09547	1314 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	ARD1	P07347	238 aa	Predicted RBP	4.53	□□□□□ -1.68
HSP42	YDR171W	HOP1	P20050	605 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	SPO11	P23179	398 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	MBR1	P23493	339 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	DSS4	P32601	143 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	RIP-Chip
HSP42	YDR171W	PPZ2	P33329	710 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	AAP1	P37898	856 aa	Known RBP	4.53	□□□□□ -1.68
HSP42	YDR171W	PMC1	P38929	1173 aa	Predicted RBP	4.53	□□□□□ -1.68
HSP42	YDR171W	YIL166C	P40445	542 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	MAL13	P53338	473 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	BUD17	P53727	317 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	MET14	Q02196	202 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	PLP2	Q12017	286 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	YPL150W	Q12152	901 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	NYV1	Q12255	253 aa		4.53	□□□□□ -1.68
HSP42	YDR171W	CPA2	P03965	1118 aa	Known RBP	4.52	□□□□□ -1.69
HSP42	YDR171W	GAL1	P04385	528 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	ADH4	P10127	382 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	DPB3	P27344	201 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	CAP1	P28495	268 aa	Known RBP	4.52	□□□□□ -1.69
HSP42	YDR171W	YEL043W	P32618	956 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	GDT1	P38301	280 aa	Predicted RBP	4.52	□□□□□ -1.69
HSP42	YDR171W	SSP120	P39931	234 aa	Known RBP	4.52	□□□□□ -1.69
HSP42	YDR171W	YEL020C	P39994	560 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	IMA5	P40884	581 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	CTK3	P46963	296 aa	Predicted RBP	4.52	□□□□□ -1.69
HSP42	YDR171W	YPT11	P48559	417 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	CTF18	P49956	741 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	RIM20	Q12033	661 aa		4.52	□□□□□ -1.69
HSP42	YDR171W	TPK2	P06245	380 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	RAD3	P06839	778 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	GPA1	P08539	472 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	RDS1	P25611	832 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	CNE1	P27825	502 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	RAD24	P32641	659 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	SDS22	P36047	338 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	SWD1	P39706	426 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	RPS15	Q01855	142 aa	Known RBP	4.51	□□□□□ -1.69
HSP42	YDR171W	GYL1	Q04322	720 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	RBA50	Q04418	439 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	BRE1	Q07457	700 aa	Known RBP	4.51	□□□□□ -1.69
HSP42	YDR171W	ATG9	Q12142	997 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	YOL114C	Q12322	202 aa		4.51	□□□□□ -1.69
HSP42	YDR171W	YIL177C	P40434	1758 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	YJL225C	P40889	1758 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	FKS3	Q04952	1785 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	RPO26	P20435	155 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	RPA135	P22138	1203 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	ADY2	P25613	283 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	GSY2	P27472	705 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	ZUO1	P32527	433 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	YKT6	P36015	200 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	YKL133C	P36066	463 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	MUD2	P36084	527 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	RFT1	P38206	574 aa	Predicted RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	RIM4	P38741	713 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	PIH1	P38768	344 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	CCT4	P39078	528 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	CAJ1	P39101	391 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	YER130C	P39959	443 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	GSM1	P42950	618 aa		4.5	□□□□□ -1.69
HSP42	YDR171W	APT1	P49435	187 aa	Known RBP	4.5	□□□□□ -1.69
HSP42	YDR171W	VPS75	P53853	264 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 63.3 ms