RNA–Protein interactions for RNA: ENST00000600804.1

CHMP2A-207, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-207ENST00000600804 LAMA3Q16787 3333 aa13.9□□□□□ -0.18
CHMP2A-207ENST00000600804 PHIPQ8WWQ0 1821 aa13.9□□□□□ -0.18
CHMP2A-207ENST00000600804 FLT1P17948 1338 aa13.9□□□□□ -0.19
CHMP2A-207ENST00000600804 KCNA4P22459 653 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 TNNI2P48788 182 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 NFIAQ12857 509 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 VGLL4Q14135 290 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 IFNL3Q8IZI9 196 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 TGFBRAP1Q8WUH2 860 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 DDRGK1Q96HY6 314 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 TMEM39BQ9GZU3 492 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 OSBPL5Q9H0X9 879 aaPredicted RBP13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 DHX36Q9H2U1 1008 aaKnown RBP13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 EPB41L4AQ9HCS5 686 aaPredicted RBP13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 PTCH2Q9Y6C5 1203 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 DOCK3Q8IZD9 2030 aa13.89□□□□□ -0.19
CHMP2A-207ENST00000600804 LAMA4Q16363 1823 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 TCP10L2B9ZVM9 353 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 PRKAB2O43741 272 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 USP5P45974 858 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 FXR1P51114 621 aaKnown RBP eCLIP13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 VPS53Q5VIR6 699 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 SDR42E1Q8WUS8 393 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 ARHGAP39Q9C0H5 1083 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 DDX4Q9NQI0 724 aaKnown RBP13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 ARPP21Q9UBL0 812 aaPredicted RBP13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 CTNNA3Q9UI47 895 aa13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 U3KPZ7 1027 aaPredicted RBP13.88□□□□□ -0.19
CHMP2A-207ENST00000600804 CCL15-CCL14A0A0B4J2E2 113 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 FGAP02671 866 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 CACNB3P54284 484 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 CCL15Q16663 113 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 METTL16Q86W50 562 aaKnown RBP13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 BACH2Q9BYV9 841 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 ANO2Q9NQ90 1003 aa13.87□□□□□ -0.19
CHMP2A-207ENST00000600804 ROBO3Q96MS0 1386 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 CTGFP29279 349 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 NT5C2P49902 561 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 MAP3K10Q02779 954 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 PTH1RQ03431 593 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 TAF1CQ15572 869 aaPredicted RBP13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 OTUD7BQ6GQQ9 843 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 MAPKAPK5Q8IW41 473 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 USP26Q9BXU7 913 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 NAPBQ9H115 298 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 EHD4Q9H223 541 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 ANAPC4Q9UJX5 808 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 SNCAIPQ9Y6H5 919 aa13.86□□□□□ -0.19
CHMP2A-207ENST00000600804 COL6A3P12111 3177 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 USP17L12C9JPN9 530 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 USP17L21D6R901 530 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 APPP05067 770 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 PCP11498 1178 aaKnown RBP13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 TDO2P48775 406 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 PICALMQ13492 652 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 NECTIN1Q15223 517 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 C12orf60Q5U649 245 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 CTR9Q6PD62 1173 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 SH3BP5LQ7L8J4 393 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 TTC6Q86TZ1 520 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 AMOTL1Q8IY63 956 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 KCNB2Q92953 911 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 HOOK2Q96ED9 719 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 OTUD5Q96G74 571 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 MCM9Q9NXL9 1143 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 PI4KBQ9UBF8 816 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 SIPA1L1O43166 1804 aa13.85□□□□□ -0.19
CHMP2A-207ENST00000600804 SPDYE5A6NIY4 337 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 TBC1D12O60347 775 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 HLA-DOAP06340 250 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 FGRP09769 529 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 MAP3K9P80192 1104 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 GABPAQ06546 454 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 TSGA10IPQ3SY00 556 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 FOXP4Q8IVH2 680 aaPredicted RBP13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 ZFPM1Q8IX07 1006 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 SH3TC2Q8TF17 1288 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 IL17RAQ96F46 866 aa13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 COLQQ9Y215 455 aaPredicted RBP13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 RBM8AQ9Y5S9 174 aaKnown RBP13.84□□□□□ -0.19
CHMP2A-207ENST00000600804 ATAD5Q96QE3 1844 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 DOCK1Q14185 1865 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 DDTLA6NHG4 134 aaPredicted RBP13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 MYCP01106 439 aaPredicted RBP13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 HSPA4P34932 840 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 GTF2A2P52657 109 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 TCP10Q12799 353 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 IMMTQ16891 758 aaKnown RBP13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 ZKSCAN4Q969J2 545 aaPredicted RBP13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 SHISA4Q96DD7 197 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 ZFYVE28Q9HCC9 887 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 HERC5Q9UII4 1024 aaKnown RBP13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 PALD1Q9ULE6 856 aa13.83□□□□□ -0.2
CHMP2A-207ENST00000600804 BTBD19C9JJ37 291 aa13.82□□□□□ -0.2
CHMP2A-207ENST00000600804 ZNF213O14771 459 aa13.82□□□□□ -0.2
CHMP2A-207ENST00000600804 IRF6O14896 467 aa13.82□□□□□ -0.2
CHMP2A-207ENST00000600804 SEC24BO95487 1268 aa13.82□□□□□ -0.2
CHMP2A-207ENST00000600804 POLR3DP05423 398 aaPredicted RBP13.82□□□□□ -0.2
CHMP2A-207ENST00000600804 SLC3A2P08195 630 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms