RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SARSP49591 514 aaKnown RBP12.25□□□□□ -0.45
CCDC40-207ENST00000572253 BRD3Q15059 726 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 AEBP2Q6ZN18 517 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-207ENST00000572253 DNAJC10Q8IXB1 793 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 IGSF22Q8N9C0 903 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 DESI2Q9BSY9 194 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 KCPQ6ZWJ8 1503 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 TXLNAP40222 546 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 SPATA1Q5VX52 437 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 KLHL10Q6JEL2 608 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 NLRP10Q86W26 655 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 SPATA5Q8NB90 893 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 MTA3Q9BTC8 594 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 BRMS1Q9HCU9 246 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 SAMSN1Q9NSI8 373 aaKnown RBP12.25□□□□□ -0.45
CCDC40-207ENST00000572253 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-207ENST00000572253 A0A1B0GTH6 734 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 TOB1P50616 345 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-207ENST00000572253 RCAN1P53805 252 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 ANKRD20A12PQ8NF67 263 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 DHX58Q96C10 678 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 PARD6BQ9BYG5 372 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 ARMT1Q9H993 441 aa12.25□□□□□ -0.45
CCDC40-207ENST00000572253 SYNRGQ9UMZ2 1314 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 PDE8AO60658 829 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CHMP4BP1P59074 171 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 NR1I3Q14994 352 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 RSRC2Q7L4I2 434 aaKnown RBP12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CABP5Q9NP86 173 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 PCDHB6Q9Y5E3 794 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 MROH5Q6ZUA9 1318 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CCDC151A5D8V7 595 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 TBC1D8O95759 1140 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 GRAMD1CQ8IYS0 662 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CRACR2BQ8N4Y2 399 aaPredicted RBP12.24□□□□□ -0.45
CCDC40-207ENST00000572253 SLC4A4Q9Y6R1 1079 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 TCRBV5S4A2TA0A5A2 114 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 GUCY1A2P33402 732 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 PPP2R5BQ15173 497 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CNGA4Q8IV77 575 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CPLX3Q8WVH0 158 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 STAG1Q8WVM7 1258 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CCDC51Q96ER9 411 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 CSRNP2Q9H175 543 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 LZTFL1Q9NQ48 299 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 INCENPQ9NQS7 918 aa12.24□□□□□ -0.45
CCDC40-207ENST00000572253 ADAMTSL3P82987 1691 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 TNS2Q63HR2 1409 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 ACTN4O43707 911 aaKnown RBP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 EVA1CP58658 441 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 KIF4BQ2VIQ3 1234 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 SRGAP1Q7Z6B7 1085 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 KIFC2Q96AC6 838 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 EPB41L4AQ9HCS5 686 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 RTL9Q8NET4 1388 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 UBE2Q2LH0YL09 131 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 FANCGO15287 622 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 GRIN1Q05586 938 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 NR5A1Q13285 461 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 SYNE4Q8N205 404 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 FANCBQ8NB91 859 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 ZKSCAN3Q9BRR0 538 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 AATFQ9NY61 560 aaKnown RBP eCLIP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 DCCP43146 1447 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 NID2Q14112 1375 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 EIF3JO75822 258 aaKnown RBP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 AFMP43652 599 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 ZNF654Q8IZM8 581 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 VGLL2Q8N8G2 317 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 NKX2-3Q8TAU0 364 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 CARD10Q9BWT7 1032 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 TSPYL1Q9H0U9 437 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 EPC1Q9H2F5 836 aa12.23□□□□□ -0.45
CCDC40-207ENST00000572253 CWC15Q9P013 229 aaKnown RBP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 TTF2Q9UNY4 1162 aaKnown RBP12.23□□□□□ -0.45
CCDC40-207ENST00000572253 SEMA3EO15041 775 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 FERMT2Q96AC1 680 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 CDC23Q9UJX2 597 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 CTAGE9A4FU28 777 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 SOWAHDA6NJG2 315 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 KRT2P35908 639 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 STX17P56962 302 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 LONRF2Q1L5Z9 754 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 HELBQ8NG08 1087 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-207ENST00000572253 GBP3Q9H0R5 595 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 ZSWIM4Q9H7M6 989 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 ADGRG1Q9Y653 693 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 DDX60Q8IY21 1712 aaKnown RBP12.22□□□□□ -0.45
CCDC40-207ENST00000572253 RBL2Q08999 1139 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 ZNF569Q5MCW4 686 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 GSDMAQ96QA5 445 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 RNF26Q9BY78 433 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-207ENST00000572253 MRPL44Q9H9J2 332 aaKnown RBP12.22□□□□□ -0.45
CCDC40-207ENST00000572253 STRN4Q9NRL3 753 aa12.22□□□□□ -0.45
CCDC40-207ENST00000572253 GSG1L2A8MUP6 293 aa12.21□□□□□ -0.45
CCDC40-207ENST00000572253 HNRNPH2P55795 449 aaKnown RBP12.21□□□□□ -0.45
CCDC40-207ENST00000572253 SPAG1Q07617 926 aa12.21□□□□□ -0.45
CCDC40-207ENST00000572253 ESR2Q92731 530 aa12.21□□□□□ -0.45
CCDC40-207ENST00000572253 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.45
CCDC40-207ENST00000572253 HLFQ16534 295 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms