RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CCDC144CPQ8IYA2 1237 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 DIS3L2Q8IYB7 885 aaKnown RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 KRI1Q8N9T8 703 aaKnown RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 ZNF579Q8NAF0 562 aaKnown RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 CTCFLQ8NI51 663 aaPredicted RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 RBM17Q96I25 401 aaKnown RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 MYL10Q9BUA6 226 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 TRIM5Q9C035 493 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 DCP1AQ9NPI6 582 aaPredicted RBP7.64□□□□□ -1.19
USP28-206ENST00000538224 FAM13BQ9NYF5 915 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 KIAA1468Q9P260 1216 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 ANKIB1Q9P2G1 1089 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 HPSEQ9Y251 543 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 ANKRD31Q8N7Z5 1873 aa7.64□□□□□ -1.19
USP28-206ENST00000538224 MROH7-TTC4A0A0A0MT08 1334 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 A0A1B0GVL5 298 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 IKBKBO14920 756 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 PRPF3O43395 683 aaKnown RBP7.63□□□□□ -1.19
USP28-206ENST00000538224 ZNF202O95125 648 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 TM4SF1P30408 202 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 KRT2P35908 639 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 GNAQP50148 359 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 DYNLL1P63167 89 aaKnown RBP7.63□□□□□ -1.19
USP28-206ENST00000538224 CHAF1AQ13111 956 aaPredicted RBP7.63□□□□□ -1.19
USP28-206ENST00000538224 NFIXQ14938 502 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 IQCB1Q15051 598 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 PTPAQ15257 358 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 KANK3Q6NY19 840 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 FAM196AQ6ZSG2 479 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 NBPF11Q86T75 865 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 SEPT12Q8IYM1 358 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 ENAHQ8N8S7 591 aaPredicted RBP7.63□□□□□ -1.19
USP28-206ENST00000538224 TBC1D22AQ8WUA7 517 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 NUP133Q8WUM0 1156 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 PYM1Q9BRP8 204 aaKnown RBP7.63□□□□□ -1.19
USP28-206ENST00000538224 ZKSCAN3Q9BRR0 538 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 SENP2Q9HC62 589 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 SPTLC3Q9NUV7 552 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 AATFQ9NY61 560 aaKnown RBP eCLIP7.63□□□□□ -1.19
USP28-206ENST00000538224 DACH1Q9UI36 760 aa7.63□□□□□ -1.19
USP28-206ENST00000538224 CNTNAP5Q8WYK1 1306 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.62□□□□□ -1.19
USP28-206ENST00000538224 TSPY2A6NKD2 308 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 USP17L12C9JPN9 530 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 USP17L21D6R901 530 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 NRDCO43847 1150 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 PPFIA3O75145 1194 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 BBOX1O75936 387 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 CALML3P27482 149 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 PRDX5P30044 214 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 USP5P45974 858 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 TRAPPC10P48553 1259 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 KCNQ4P56696 695 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 GSDMDP57764 484 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 PPP4CP60510 307 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 CRY2Q49AN0 593 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 PRR5LQ6MZQ0 368 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 OLFM4Q6UX06 510 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 C11orf57Q6ZUT1 292 aaPredicted RBP7.62□□□□□ -1.19
USP28-206ENST00000538224 TMTC3Q6ZXV5 915 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 FERMT2Q96AC1 680 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 PRIMPOLQ96LW4 560 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 AIFM3Q96NN9 605 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 CRAMP1Q96RY5 1269 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 TFCP2L1Q9NZI6 479 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 IMPACTQ9P2X3 320 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 CLIP2Q9UDT6 1046 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 GGA1Q9UJY5 639 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 TACC3Q9Y6A5 838 aa7.62□□□□□ -1.19
USP28-206ENST00000538224 C10orf71Q711Q0 1435 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 TRIM75PA6NK02 468 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 BTBD18B2RXH4 712 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 CBFA2T2O43439 604 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 GYS1P13807 737 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 IL1R1P14778 569 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 PTPREP23469 700 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 KLRK1P26718 216 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 MARCKSP29966 332 aaPredicted RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 HOXA10P31260 410 aaPredicted RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 TROAPQ12815 778 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 NOLC1Q14978 699 aaKnown RBP eCLIP7.61□□□□□ -1.19
USP28-206ENST00000538224 CT47A1Q5JQC4 288 aaPredicted RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 DNTTIP2Q5QJE6 756 aaKnown RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 PTF1AQ7RTS3 328 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 DGKHQ86XP1 1220 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 DHX40Q8IX18 779 aaKnown RBP7.61□□□□□ -1.19
USP28-206ENST00000538224 AOPEPQ8N6M6 819 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 TRIML1Q8N9V2 468 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 SPC24Q8NBT2 197 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 CNNM3Q8NE01 707 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 NKX2-3Q8TAU0 364 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 ZNF384Q8TF68 577 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 ANKS1AQ92625 1134 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 LZTS2Q9BRK4 669 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 PHF20Q9BVI0 1012 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 KAT14Q9H8E8 782 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 INCENPQ9NQS7 918 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 SH3GLB2Q9NR46 395 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 GJB4Q9NTQ9 266 aa7.61□□□□□ -1.19
USP28-206ENST00000538224 TCP11L1Q9NUJ3 509 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms