RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 MST1RQ04912 1400 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 FOXP2O15409 715 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 VDRP11473 427 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 ZAP70P43403 619 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 KANK3Q6NY19 840 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 DHX40Q8IX18 779 aaKnown RBP13.54□□□□□ -0.24
SYNE2-207ENST00000458046 PUS7LQ9H0K6 701 aaKnown RBP13.54□□□□□ -0.24
SYNE2-207ENST00000458046 CLIC4Q9Y696 253 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 KLF18A0A0U1RQI7 1052 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 RRM1P23921 792 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 SCNN1AP37088 669 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 CBX1P83916 185 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 IMMTQ16891 758 aaKnown RBP13.54□□□□□ -0.24
SYNE2-207ENST00000458046 LRRC8AQ8IWT6 810 aa13.54□□□□□ -0.24
SYNE2-207ENST00000458046 CIAO1O76071 339 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 NDUFA8P51970 172 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 AMPD3Q01432 767 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 EN1Q05925 392 aaPredicted RBP13.53□□□□□ -0.24
SYNE2-207ENST00000458046 SEPT12Q8IYM1 358 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 SYNE4Q8N205 404 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 AOPEPQ8N6M6 819 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 CDC5LQ99459 802 aaKnown RBP13.53□□□□□ -0.24
SYNE2-207ENST00000458046 ANO10Q9NW15 660 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 ALS2Q96Q42 1657 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 CC2D1AQ6P1N0 951 aaPredicted RBP13.53□□□□□ -0.24
SYNE2-207ENST00000458046 PDCL2Q8N4E4 241 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 MRPS27Q92552 414 aaKnown RBP13.53□□□□□ -0.24
SYNE2-207ENST00000458046 C8orf76Q96K31 380 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 PRDM11Q9NQV5 511 aa13.53□□□□□ -0.24
SYNE2-207ENST00000458046 GOLGA8BA8MQT2 603 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 STK38Q15208 465 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 ATL3Q6DD88 541 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 SARM1Q6SZW1 724 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 FMR1NBQ8N0W7 255 aaPredicted RBP13.52□□□□□ -0.24
SYNE2-207ENST00000458046 ARPC5LQ9BPX5 153 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 ORC3Q9UBD5 711 aaPredicted RBP13.52□□□□□ -0.24
SYNE2-207ENST00000458046 CTNNA3Q9UI47 895 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 SPATA31A3Q5VYP0 1347 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 PCDH11XQ9BZA7 1347 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 PCDH11YQ9BZA8 1340 aa13.52□□□□□ -0.24
SYNE2-207ENST00000458046 USP27XA6NNY8 438 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 ERVV-2B6SEH9 535 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 CDC25BP30305 580 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 ATP2B3Q16720 1220 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 MRFAP1L1Q96HT8 127 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 ATG3Q9NT62 314 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 RTEL1Q9NZ71 1219 aa13.52□□□□□ -0.25
SYNE2-207ENST00000458046 DYTNA2CJ06 578 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 CPLX1O14810 134 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 TNNI2P48788 182 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 NAA30Q147X3 362 aaPredicted RBP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 ADALQ6DHV7 355 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 NBPF5PQ86XG9 351 aaPredicted RBP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 LINC00301Q8NCQ3 95 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 BORCS6Q96GS4 357 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 DENND2AQ9ULE3 1009 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 HPS5Q9UPZ3 1129 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 KIF1AQ12756 1690 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 SOWAHDA6NJG2 315 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 BIN1O00499 593 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 ZNF213O14771 459 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 CTIFO43310 598 aaKnown RBP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 SKILP12757 684 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 LMOD1P29536 600 aaPredicted RBP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 TCIRG1Q13488 830 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 SYCP2LQ5T4T6 812 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 CEP57L1Q8IYX8 460 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 SGIP1Q9BQI5 828 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 IER2Q9BTL4 223 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 TRMT1Q9NXH9 659 aaKnown RBP13.51□□□□□ -0.25
SYNE2-207ENST00000458046 AKAP2Q9Y2D5 859 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 COL18A1P39060 1754 aa13.51□□□□□ -0.25
SYNE2-207ENST00000458046 ANTXR2P58335 489 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 KCTD2Q14681 263 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 VPS72Q15906 364 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 RALYLQ86SE5 291 aaKnown RBP13.5□□□□□ -0.25
SYNE2-207ENST00000458046 FBXO18Q8NFZ0 1043 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 ISCA1Q9BUE6 129 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 LAMA4Q16363 1823 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 CCDC69A6NI79 296 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 KIF28PB7ZC32 967 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 GPAA1O43292 621 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 TIMM44O43615 452 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 EVCP57679 992 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 LRRFIP1Q32MZ4 808 aaKnown RBP13.5□□□□□ -0.25
SYNE2-207ENST00000458046 ISM2Q6H9L7 571 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 MB21D2Q8IYB1 491 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-207ENST00000458046 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.5□□□□□ -0.25
SYNE2-207ENST00000458046 STRN4Q9NRL3 753 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 TNS3Q68CZ2 1445 aa13.5□□□□□ -0.25
SYNE2-207ENST00000458046 PALM3A6NDB9 673 aaPredicted RBP13.49□□□□□ -0.25
SYNE2-207ENST00000458046 SMTNL1A8MU46 457 aa13.49□□□□□ -0.25
SYNE2-207ENST00000458046 SPTLC2O15270 562 aa13.49□□□□□ -0.25
SYNE2-207ENST00000458046 RXRAP19793 462 aa13.49□□□□□ -0.25
SYNE2-207ENST00000458046 GPTP24298 496 aa13.49□□□□□ -0.25
SYNE2-207ENST00000458046 U2AF2P26368 475 aaKnown RBP eCLIP13.49□□□□□ -0.25
SYNE2-207ENST00000458046 IFIT5Q13325 482 aaKnown RBP13.49□□□□□ -0.25
SYNE2-207ENST00000458046 ZRSR1Q15695 479 aaKnown RBP13.49□□□□□ -0.25
SYNE2-207ENST00000458046 DPCR1Q3MIW9 517 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms