RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gm9955Q8CEJ8 102 aa9.51□□□□□ -0.89
Ccdc88b-201ENSMUST00000113440 Tenm4Q3UHK6 2771 aa9.51□□□□□ -0.89
Ccdc88b-201ENSMUST00000113440 Gm3646F6S692 53 aa9.49□□□□□ -0.89
Ccdc88b-201ENSMUST00000113440 TgO08710 2766 aa9.48□□□□□ -0.89
Ccdc88b-201ENSMUST00000113440 Cmya5Q70KF4 3739 aa9.45□□□□□ -0.9
Ccdc88b-201ENSMUST00000113440 Gm9507D3Z5T3 223 aa9.43□□□□□ -0.9
Ccdc88b-201ENSMUST00000113440 Muc4Q8JZM8 3443 aa9.41□□□□□ -0.9
Ccdc88b-201ENSMUST00000113440 4933415A04RikQ9D443 101 aa9.41□□□□□ -0.9
Ccdc88b-201ENSMUST00000113440 Gm37013Q8K491 104 aa9.39□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 2310061N02RikQ9D6S9 174 aa9.39□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 Gm3880A0A1B0GSB3 72 aa9.38□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 1700042G07RikB1AUF7 90 aa9.36□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 Gm9821Q8K076 103 aa9.36□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 Krtap29-1A2A5X4 342 aa9.35□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 Pla2g10Q9QXX3 151 aa9.35□□□□□ -0.91
Ccdc88b-201ENSMUST00000113440 Gm4491E0CX42 125 aa9.33□□□□□ -0.92
Ccdc88b-201ENSMUST00000113440 Gm16253D3Z167 63 aa9.3□□□□□ -0.92
Ccdc88b-201ENSMUST00000113440 2310050C09RikG5E8Z3 280 aa9.27□□□□□ -0.93
Ccdc88b-201ENSMUST00000113440 Krtap13O88375 197 aa9.25□□□□□ -0.93
Ccdc88b-201ENSMUST00000113440 FcgbpE9Q0B5 2583 aa9.25□□□□□ -0.93
Ccdc88b-201ENSMUST00000113440 Krtap10-4Q08EG8 221 aa9.25□□□□□ -0.93
Ccdc88b-201ENSMUST00000113440 Spink7Q6IE32 76 aa9.17□□□□□ -0.94
Ccdc88b-201ENSMUST00000113440 Krtap14O08640 167 aa9.13□□□□□ -0.95
Ccdc88b-201ENSMUST00000113440 Gm2310J3QNJ2 377 aa9.1□□□□□ -0.95
Ccdc88b-201ENSMUST00000113440 Fbn1Q61554 2873 aaKnown RBP9.1□□□□□ -0.95
Ccdc88b-201ENSMUST00000113440 Krtap10-10A0A1W2P7T6 217 aa9.08□□□□□ -0.96
Ccdc88b-201ENSMUST00000113440 Tenm1Q9WTS4 2731 aa9.07□□□□□ -0.96
Ccdc88b-201ENSMUST00000113440 Csmd2V9GX34 3611 aa9.04□□□□□ -0.96
Ccdc88b-201ENSMUST00000113440 Rpl37Q9D823 97 aa9.03□□□□□ -0.96
Ccdc88b-201ENSMUST00000113440 Krtap15-1Q9QZU5 150 aa9.03□□□□□ -0.96
Ccdc88b-201ENSMUST00000113440 Camk2n1Q6QWF9 78 aa8.99□□□□□ -0.97
Ccdc88b-201ENSMUST00000113440 Tnp2P11378 117 aa8.99□□□□□ -0.97
Ccdc88b-201ENSMUST00000113440 Romo1P60603 79 aa8.98□□□□□ -0.97
Ccdc88b-201ENSMUST00000113440 Fam229aB2KGE5 128 aa8.97□□□□□ -0.97
Ccdc88b-201ENSMUST00000113440 Sec61bQ9CQS8 96 aaKnown RBP8.91□□□□□ -0.98
Ccdc88b-201ENSMUST00000113440 Gm5767A0A0J9YTU8 78 aa8.91□□□□□ -0.98
Ccdc88b-201ENSMUST00000113440 Gm2696A0A1W2P709 240 aa8.91□□□□□ -0.98
Ccdc88b-201ENSMUST00000113440 Ank2Q8C8R3 3898 aa8.9□□□□□ -0.98
Ccdc88b-201ENSMUST00000113440 BC029722A0A0N4SW31 51 aa8.84□□□□□ -0.99
Ccdc88b-201ENSMUST00000113440 Gm10382Q3V0T5 144 aa8.82□□□□□ -1
Ccdc88b-201ENSMUST00000113440 VwfQ8CIZ8 2813 aa8.81□□□□□ -1
Ccdc88b-201ENSMUST00000113440 Cox6b2Q80ZN9 88 aa8.78□□□□□ -1
Ccdc88b-201ENSMUST00000113440 Rps29P62274 56 aa8.76□□□□□ -1.01
Ccdc88b-201ENSMUST00000113440 Tenm2Q9WTS5 2764 aa8.71□□□□□ -1.01
Ccdc88b-201ENSMUST00000113440 Col7a1Q63870 2944 aa8.71□□□□□ -1.02
Ccdc88b-201ENSMUST00000113440 Gm19426M0QWC7 77 aa8.7□□□□□ -1.02
Ccdc88b-201ENSMUST00000113440 LystP97412 3788 aa8.69□□□□□ -1.02
Ccdc88b-201ENSMUST00000113440 CubnQ9JLB4 3623 aa8.69□□□□□ -1.02
Ccdc88b-201ENSMUST00000113440 D6Ertd527eA0A0N4SWI3 464 aa8.6□□□□□ -1.03
Ccdc88b-201ENSMUST00000113440 Xirp2Q4U4S6 3784 aa8.52□□□□□ -1.05
Ccdc88b-201ENSMUST00000113440 Muc6Q80T03 2850 aa8.48□□□□□ -1.05
Ccdc88b-201ENSMUST00000113440 BsnO88737 3942 aa8.45□□□□□ -1.06
Ccdc88b-201ENSMUST00000113440 Gm5965D3Z724 196 aa8.42□□□□□ -1.06
Ccdc88b-201ENSMUST00000113440 Ndufaf8A2AMZ4 74 aa8.41□□□□□ -1.06
Ccdc88b-201ENSMUST00000113440 Dnah14A0A140LIJ4 4489 aa8.35□□□□□ -1.07
Ccdc88b-201ENSMUST00000113440 Gm9918Q8BUR5 174 aa8.35□□□□□ -1.07
Ccdc88b-201ENSMUST00000113440 Gm40193A0A1B0GT39 78 aa8.29□□□□□ -1.08
Ccdc88b-201ENSMUST00000113440 Gm20537G3UYK7 97 aa8.27□□□□□ -1.09
Ccdc88b-201ENSMUST00000113440 2310079G19RikQ9D6L6 185 aa8.25□□□□□ -1.09
Ccdc88b-201ENSMUST00000113440 Gm21887J3QQ04 176 aa8.24□□□□□ -1.09
Ccdc88b-201ENSMUST00000113440 Megf8P60882 2789 aa8.23□□□□□ -1.09
Ccdc88b-201ENSMUST00000113440 A930033H14RikG5E8X6 103 aa8.21□□□□□ -1.09
Ccdc88b-201ENSMUST00000113440 Hspg2Q05793 3707 aaKnown RBP8.2□□□□□ -1.1
Ccdc88b-201ENSMUST00000113440 2310057N15RikQ9D6T8 200 aa8.16□□□□□ -1.1
Ccdc88b-201ENSMUST00000113440 Tnp1P10856 55 aa8.12□□□□□ -1.11
Ccdc88b-201ENSMUST00000113440 Gm9736A0A1W2P7N1 277 aa8.12□□□□□ -1.11
Ccdc88b-201ENSMUST00000113440 Gm9112A2AI92 75 aa8.11□□□□□ -1.11
Ccdc88b-201ENSMUST00000113440 Huwe1Q7TMY8 4377 aaKnown RBP8.06□□□□□ -1.12
Ccdc88b-201ENSMUST00000113440 Csmd3Q80T79 3707 aa8.02□□□□□ -1.13
Ccdc88b-201ENSMUST00000113440 Dnah10D3YYQ8 4591 aa7.99□□□□□ -1.13
Ccdc88b-201ENSMUST00000113440 Gm11939A2A592 99 aa7.97□□□□□ -1.13
Ccdc88b-201ENSMUST00000113440 B930094E09RikQ8C4T2 136 aa7.92□□□□□ -1.14
Ccdc88b-201ENSMUST00000113440 Dnah17Q69Z23 4481 aa7.91□□□□□ -1.14
Ccdc88b-201ENSMUST00000113440 Dnah7bL7N1Y0 4068 aa7.89□□□□□ -1.15
Ccdc88b-201ENSMUST00000113440 Gm17416Q30KP4 66 aa7.86□□□□□ -1.15
Ccdc88b-201ENSMUST00000113440 Krtap3-2Q9D638 99 aa7.86□□□□□ -1.15
Ccdc88b-201ENSMUST00000113440 Krtap3-3Q9D7P0 99 aa7.86□□□□□ -1.15
Ccdc88b-201ENSMUST00000113440 Krtap19-5O08632 62 aa7.84□□□□□ -1.15
Ccdc88b-201ENSMUST00000113440 PlecQ9QXS1 4691 aaKnown RBP7.78□□□□□ -1.16
Ccdc88b-201ENSMUST00000113440 Dnah11E9Q7N9 4488 aa7.77□□□□□ -1.17
Ccdc88b-201ENSMUST00000113440 Dnah5Q8VHE6 4621 aa7.75□□□□□ -1.17
Ccdc88b-201ENSMUST00000113440 Prm2P07978 107 aa7.72□□□□□ -1.17
Ccdc88b-201ENSMUST00000113440 2210017I01RikA0A0A6YVV1 95 aa7.72□□□□□ -1.17
Ccdc88b-201ENSMUST00000113440 Gm17402F6Z0L5 76 aa7.69□□□□□ -1.18
Ccdc88b-201ENSMUST00000113440 Dnah9B1AR51 4484 aa7.66□□□□□ -1.18
Ccdc88b-201ENSMUST00000113440 Vps13dB1ART2 4390 aa7.64□□□□□ -1.19
Ccdc88b-201ENSMUST00000113440 Dnah3Q8BW94 4083 aa7.59□□□□□ -1.19
Ccdc88b-201ENSMUST00000113440 Dnah6E9Q0B6 4144 aa7.57□□□□□ -1.2
Ccdc88b-201ENSMUST00000113440 TnxbO35452 4006 aa7.57□□□□□ -1.2
Ccdc88b-201ENSMUST00000113440 Kmt2aP55200 3966 aa7.55□□□□□ -1.2
Ccdc88b-201ENSMUST00000113440 Gm10318A0A1W2P728 225 aa7.53□□□□□ -1.2
Ccdc88b-201ENSMUST00000113440 Stard9Q80TF6 4561 aa7.53□□□□□ -1.2
Ccdc88b-201ENSMUST00000113440 PrkdcP97313 4128 aa7.52□□□□□ -1.21
Ccdc88b-201ENSMUST00000113440 Dync2h1Q45VK7 4306 aa7.46□□□□□ -1.22
Ccdc88b-201ENSMUST00000113440 Krtap13-1Q8K198 168 aa7.45□□□□□ -1.22
Ccdc88b-201ENSMUST00000113440 Krtap3-1A2A591 98 aa7.44□□□□□ -1.22
Ccdc88b-201ENSMUST00000113440 Crct1Q6PAI5 102 aa7.43□□□□□ -1.22
Ccdc88b-201ENSMUST00000113440 Lrp1bQ9JI18 4599 aa7.39□□□□□ -1.23
Ccdc88b-201ENSMUST00000113440 ApobE9Q414 4505 aa7.39□□□□□ -1.23
Ccdc88b-201ENSMUST00000113440 Dnah1E9Q8T7 4250 aa7.36□□□□□ -1.23
Retrieved 100 of 22,080 RNA–protein pairs in 23.7 ms