RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Gm10643Q3URG9 111 aa7.79□□□□□ -1.16
Clcn3-201ENSMUST00000004430 Gm3646F6S692 53 aa7.78□□□□□ -1.16
Clcn3-201ENSMUST00000004430 4933415A04RikQ9D443 101 aa7.78□□□□□ -1.16
Clcn3-201ENSMUST00000004430 2310034C09RikQ9D746 214 aa7.77□□□□□ -1.17
Clcn3-201ENSMUST00000004430 RetnlbQ99P86 105 aa7.77□□□□□ -1.17
Clcn3-201ENSMUST00000004430 4930507D05RikQ8C9C9 103 aa7.74□□□□□ -1.17
Clcn3-201ENSMUST00000004430 Cypt14J3QPF7 87 aa7.7□□□□□ -1.18
Clcn3-201ENSMUST00000004430 Gm26620Q9CY65 116 aa7.68□□□□□ -1.18
Clcn3-201ENSMUST00000004430 VwfQ8CIZ8 2813 aa7.67□□□□□ -1.18
Clcn3-201ENSMUST00000004430 NbdyA0A0N4SUI7 68 aa7.66□□□□□ -1.18
Clcn3-201ENSMUST00000004430 Gm10065F6TJM2 114 aa7.64□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm17349F7BGH6 99 aa7.64□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm9507D3Z5T3 223 aa7.64□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Krtap13O88375 197 aa7.64□□□□□ -1.19
Clcn3-201ENSMUST00000004430 1700042G07RikB1AUF7 90 aa7.63□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm2310J3QNJ2 377 aa7.6□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm12216A0A1W2P827 62 aa7.6□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm3880A0A1B0GSB3 72 aa7.59□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm17606F6ZL36 78 aa7.59□□□□□ -1.19
Clcn3-201ENSMUST00000004430 Gm16253D3Z167 63 aa7.58□□□□□ -1.2
Clcn3-201ENSMUST00000004430 AW011738F6S7Q2 159 aa7.58□□□□□ -1.2
Clcn3-201ENSMUST00000004430 Krtap10-4Q08EG8 221 aa7.58□□□□□ -1.2
Clcn3-201ENSMUST00000004430 Gm9821Q8K076 103 aa7.58□□□□□ -1.2
Clcn3-201ENSMUST00000004430 2310061N02RikQ9D6S9 174 aa7.57□□□□□ -1.2
Clcn3-201ENSMUST00000004430 Dnah14A0A140LIJ4 4489 aa7.54□□□□□ -1.2
Clcn3-201ENSMUST00000004430 CriptO70333 101 aa7.52□□□□□ -1.2
Clcn3-201ENSMUST00000004430 Dnah10D3YYQ8 4591 aa7.52□□□□□ -1.21
Clcn3-201ENSMUST00000004430 Kmt2aP55200 3966 aa7.49□□□□□ -1.21
Clcn3-201ENSMUST00000004430 Gm4491E0CX42 125 aa7.46□□□□□ -1.22
Clcn3-201ENSMUST00000004430 2310050C09RikG5E8Z3 280 aa7.45□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Rnase13Q5GAM7 153 aa7.45□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Krtap29-1A2A5X4 342 aa7.43□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Krtap14O08640 167 aa7.42□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Dnah3Q8BW94 4083 aa7.42□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Krtap10-10A0A1W2P7T6 217 aa7.41□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Dnah7bL7N1Y0 4068 aa7.41□□□□□ -1.22
Clcn3-201ENSMUST00000004430 Dnah17Q69Z23 4481 aa7.38□□□□□ -1.23
Clcn3-201ENSMUST00000004430 Dnah6E9Q0B6 4144 aa7.36□□□□□ -1.23
Clcn3-201ENSMUST00000004430 Megf8P60882 2789 aa7.35□□□□□ -1.23
Clcn3-201ENSMUST00000004430 Muc6Q80T03 2850 aa7.33□□□□□ -1.24
Clcn3-201ENSMUST00000004430 Tenm2Q9WTS5 2764 aa7.31□□□□□ -1.24
Clcn3-201ENSMUST00000004430 Mp68P56379 58 aa7.31□□□□□ -1.24
Clcn3-201ENSMUST00000004430 Huwe1Q7TMY8 4377 aaKnown RBP7.25□□□□□ -1.25
Clcn3-201ENSMUST00000004430 Dnah1E9Q8T7 4250 aa7.25□□□□□ -1.25
Clcn3-201ENSMUST00000004430 Gm2696A0A1W2P709 240 aa7.22□□□□□ -1.25
Clcn3-201ENSMUST00000004430 Tnp2P11378 117 aa7.2□□□□□ -1.26
Clcn3-201ENSMUST00000004430 Gm9955Q8CEJ8 102 aa7.19□□□□□ -1.26
Clcn3-201ENSMUST00000004430 Csmd3Q80T79 3707 aa7.19□□□□□ -1.26
Clcn3-201ENSMUST00000004430 Krtap15-1Q9QZU5 150 aa7.18□□□□□ -1.26
Clcn3-201ENSMUST00000004430 Dnah11E9Q7N9 4488 aa7.16□□□□□ -1.26
Clcn3-201ENSMUST00000004430 Gm9918Q8BUR5 174 aa7.16□□□□□ -1.26
Clcn3-201ENSMUST00000004430 TnxbO35452 4006 aa7.15□□□□□ -1.26
Clcn3-201ENSMUST00000004430 D6Ertd527eA0A0N4SWI3 464 aa7.12□□□□□ -1.27
Clcn3-201ENSMUST00000004430 Dnah9B1AR51 4484 aa7.1□□□□□ -1.27
Clcn3-201ENSMUST00000004430 PlecQ9QXS1 4691 aaKnown RBP7.07□□□□□ -1.28
Clcn3-201ENSMUST00000004430 Dync2h1Q45VK7 4306 aa7.05□□□□□ -1.28
Clcn3-201ENSMUST00000004430 PrkdcP97313 4128 aa7.04□□□□□ -1.28
Clcn3-201ENSMUST00000004430 Rpl37Q9D823 97 aa7.04□□□□□ -1.28
Clcn3-201ENSMUST00000004430 Cox6b2Q80ZN9 88 aa7.02□□□□□ -1.29
Clcn3-201ENSMUST00000004430 Gm10382Q3V0T5 144 aa7.01□□□□□ -1.29
Clcn3-201ENSMUST00000004430 Romo1P60603 79 aa7.01□□□□□ -1.29
Clcn3-201ENSMUST00000004430 Pla2g10Q9QXX3 151 aa6.99□□□□□ -1.29
Clcn3-201ENSMUST00000004430 Gm5767A0A0J9YTU8 78 aa6.98□□□□□ -1.29
Clcn3-201ENSMUST00000004430 Gm20538F6Z9R1 75 aa6.94□□□□□ -1.3
Clcn3-201ENSMUST00000004430 Gm20537G3UYK7 97 aa6.94□□□□□ -1.3
Clcn3-201ENSMUST00000004430 Fras1Q80T14 4010 aa6.94□□□□□ -1.3
Clcn3-201ENSMUST00000004430 2310079G19RikQ9D6L6 185 aa6.93□□□□□ -1.3
Clcn3-201ENSMUST00000004430 Dnah5Q8VHE6 4621 aa6.92□□□□□ -1.3
Clcn3-201ENSMUST00000004430 Spink7Q6IE32 76 aa6.87□□□□□ -1.31
Clcn3-201ENSMUST00000004430 Dnah7cA0A087WR13 4024 aa6.82□□□□□ -1.32
Clcn3-201ENSMUST00000004430 Gm5965D3Z724 196 aa6.79□□□□□ -1.32
Clcn3-201ENSMUST00000004430 Vps13dB1ART2 4390 aa6.77□□□□□ -1.33
Clcn3-201ENSMUST00000004430 A930033H14RikG5E8X6 103 aa6.76□□□□□ -1.33
Clcn3-201ENSMUST00000004430 Gm19426M0QWC7 77 aa6.76□□□□□ -1.33
Clcn3-201ENSMUST00000004430 Dnah7aE9Q0T8 4024 aa6.73□□□□□ -1.33
Clcn3-201ENSMUST00000004430 Rps29P62274 56 aa6.72□□□□□ -1.33
Clcn3-201ENSMUST00000004430 Ndufaf8A2AMZ4 74 aa6.71□□□□□ -1.33
Clcn3-201ENSMUST00000004430 BC029722A0A0N4SW31 51 aa6.71□□□□□ -1.34
Clcn3-201ENSMUST00000004430 Dnah2P0C6F1 4456 aa6.7□□□□□ -1.34
Clcn3-201ENSMUST00000004430 Stard9Q80TF6 4561 aa6.7□□□□□ -1.34
Clcn3-201ENSMUST00000004430 Lrp1bQ9JI18 4599 aa6.7□□□□□ -1.34
Clcn3-201ENSMUST00000004430 Hectd4E9Q2E4 4418 aa6.67□□□□□ -1.34
Clcn3-201ENSMUST00000004430 Gm9736A0A1W2P7N1 277 aa6.65□□□□□ -1.35
Clcn3-201ENSMUST00000004430 ApobE9Q414 4505 aa6.64□□□□□ -1.35
Clcn3-201ENSMUST00000004430 Pkd1O08852 4293 aa6.63□□□□□ -1.35
Clcn3-201ENSMUST00000004430 Krtap3-2Q9D638 99 aa6.58□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Krtap3-3Q9D7P0 99 aa6.58□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Gm21887J3QQ04 176 aa6.57□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Camk2n1Q6QWF9 78 aa6.57□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Sec61bQ9CQS8 96 aaKnown RBP6.57□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Fam229aB2KGE5 128 aa6.56□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Gm11939A2A592 99 aa6.55□□□□□ -1.36
Clcn3-201ENSMUST00000004430 2310057N15RikQ9D6T8 200 aa6.53□□□□□ -1.36
Clcn3-201ENSMUST00000004430 Dync1h1Q9JHU4 4644 aaKnown RBP6.51□□□□□ -1.37
Clcn3-201ENSMUST00000004430 Fat1A0A1L1SQU7 4645 aa6.5□□□□□ -1.37
Clcn3-201ENSMUST00000004430 Ryr3A2AGL3 4863 aa6.45□□□□□ -1.38
Clcn3-201ENSMUST00000004430 SacsQ9JLC8 4582 aa6.44□□□□□ -1.38
Clcn3-201ENSMUST00000004430 Fat2Q5F226 4351 aa6.43□□□□□ -1.38
Clcn3-201ENSMUST00000004430 Pkhd1E9PZ36 4059 aa6.41□□□□□ -1.38
Clcn3-201ENSMUST00000004430 B930094E09RikQ8C4T2 136 aa6.4□□□□□ -1.38
Retrieved 100 of 22,080 RNA–protein pairs in 93.9 ms