RNA–Protein interactions for RNA: ENSMUST00000034060.6

Sh3rf1-201, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Sh3rf1, Length 5,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-201ENSMUST00000034060 Gm7137J3QMW1 236 aa13.43□□□□□ -0.26
Sh3rf1-201ENSMUST00000034060 Zfp292Q9Z2U2 2698 aa13.41□□□□□ -0.26
Sh3rf1-201ENSMUST00000034060 Gm17349F7BGH6 99 aa13.41□□□□□ -0.26
Sh3rf1-201ENSMUST00000034060 2310050C09RikG5E8Z3 280 aa13.4□□□□□ -0.26
Sh3rf1-201ENSMUST00000034060 Rps29P62274 56 aa13.38□□□□□ -0.27
Sh3rf1-201ENSMUST00000034060 Gm9195A0A140LHT4 2805 aa13.37□□□□□ -0.27
Sh3rf1-201ENSMUST00000034060 Myo18bE9PV66 2605 aa13.33□□□□□ -0.27
Sh3rf1-201ENSMUST00000034060 CicQ924A2 2510 aa13.33□□□□□ -0.27
Sh3rf1-201ENSMUST00000034060 Gcn1E9PVA8 2671 aaKnown RBP13.28□□□□□ -0.28
Sh3rf1-201ENSMUST00000034060 HrnrQ8VHD8 2496 aa13.25□□□□□ -0.29
Sh3rf1-201ENSMUST00000034060 FlnaQ8BTM8 2647 aaKnown RBP13.19□□□□□ -0.3
Sh3rf1-201ENSMUST00000034060 Krtap14O08640 167 aa13.14□□□□□ -0.31
Sh3rf1-201ENSMUST00000034060 Ankrd11E9Q4F7 2643 aa13.11□□□□□ -0.31
Sh3rf1-201ENSMUST00000034060 Fn1P11276 2477 aaKnown RBP13.09□□□□□ -0.31
Sh3rf1-201ENSMUST00000034060 Ndufaf8A2AMZ4 74 aa13.09□□□□□ -0.31
Sh3rf1-201ENSMUST00000034060 D6Ertd527eA0A0N4SWI3 464 aa13.08□□□□□ -0.32
Sh3rf1-201ENSMUST00000034060 Gm36176A0A1W2P8D5 158 aa13.08□□□□□ -0.32
Sh3rf1-201ENSMUST00000034060 Tnp2P11378 117 aa13.06□□□□□ -0.32
Sh3rf1-201ENSMUST00000034060 Krtap13O88375 197 aa13.06□□□□□ -0.32
Sh3rf1-201ENSMUST00000034060 2310061N02RikQ9D6S9 174 aa13.01□□□□□ -0.33
Sh3rf1-201ENSMUST00000034060 FasnP19096 2504 aaKnown RBP13.01□□□□□ -0.33
Sh3rf1-201ENSMUST00000034060 Usp24B1AY13 2617 aaKnown RBP13.01□□□□□ -0.33
Sh3rf1-201ENSMUST00000034060 Gm40193A0A1B0GT39 78 aa12.94□□□□□ -0.34
Sh3rf1-201ENSMUST00000034060 Kmt2bO08550 2713 aa12.93□□□□□ -0.34
Sh3rf1-201ENSMUST00000034060 Prrc2cQ3TLH4 2846 aaKnown RBP12.86□□□□□ -0.35
Sh3rf1-201ENSMUST00000034060 Notch1Q01705 2531 aa12.83□□□□□ -0.36
Sh3rf1-201ENSMUST00000034060 AtrQ9JKK8 2635 aa12.82□□□□□ -0.36
Sh3rf1-201ENSMUST00000034060 Ep400Q8CHI8 3072 aaKnown RBP12.8□□□□□ -0.36
Sh3rf1-201ENSMUST00000034060 Gm21887J3QQ04 176 aa12.74□□□□□ -0.37
Sh3rf1-201ENSMUST00000034060 Gm9112A2AI92 75 aa12.74□□□□□ -0.37
Sh3rf1-201ENSMUST00000034060 NipblQ6KCD5 2798 aaKnown RBP12.73□□□□□ -0.37
Sh3rf1-201ENSMUST00000034060 Golgb1E9PVZ8 3238 aa12.68□□□□□ -0.38
Sh3rf1-201ENSMUST00000034060 Map1aQ9QYR6 2776 aa12.64□□□□□ -0.39
Sh3rf1-201ENSMUST00000034060 Gm9507D3Z5T3 223 aa12.63□□□□□ -0.39
Sh3rf1-201ENSMUST00000034060 Dnah12Q3V0Q1 3086 aa12.6□□□□□ -0.39
Sh3rf1-201ENSMUST00000034060 Tnp1P10856 55 aa12.58□□□□□ -0.39
Sh3rf1-201ENSMUST00000034060 Stab1Q8R4Y4 2571 aa12.57□□□□□ -0.4
Sh3rf1-201ENSMUST00000034060 FlnbQ80X90 2602 aaKnown RBP12.55□□□□□ -0.4
Sh3rf1-201ENSMUST00000034060 PcntP48725 2898 aa12.52□□□□□ -0.41
Sh3rf1-201ENSMUST00000034060 Gm20537G3UYK7 97 aa12.49□□□□□ -0.41
Sh3rf1-201ENSMUST00000034060 Hectd1Q69ZR2 2618 aaKnown RBP12.45□□□□□ -0.42
Sh3rf1-201ENSMUST00000034060 Krtap10-4Q08EG8 221 aa12.4□□□□□ -0.43
Sh3rf1-201ENSMUST00000034060 Tep1P97499 2629 aa12.36□□□□□ -0.43
Sh3rf1-201ENSMUST00000034060 A930033H14RikG5E8X6 103 aa12.33□□□□□ -0.44
Sh3rf1-201ENSMUST00000034060 Chd6A3KFM7 2711 aa12.3□□□□□ -0.44
Sh3rf1-201ENSMUST00000034060 Tnrc18Q80WC3 2878 aa12.3□□□□□ -0.44
Sh3rf1-201ENSMUST00000034060 Prune2Q52KR3 3084 aa12.29□□□□□ -0.44
Sh3rf1-201ENSMUST00000034060 Gm42715A0A087WP63 3095 aaKnown RBP12.28□□□□□ -0.44
Sh3rf1-201ENSMUST00000034060 Krtap10-10A0A1W2P7T6 217 aa12.23□□□□□ -0.45
Sh3rf1-201ENSMUST00000034060 Cep350E9Q309 3095 aa12.23□□□□□ -0.45
Sh3rf1-201ENSMUST00000034060 B930094E09RikQ8C4T2 136 aa12.22□□□□□ -0.45
Sh3rf1-201ENSMUST00000034060 Akap13E9Q394 2776 aa12.21□□□□□ -0.46
Sh3rf1-201ENSMUST00000034060 Itpr3P70227 2670 aa12.2□□□□□ -0.46
Sh3rf1-201ENSMUST00000034060 Stab2Q8R4U0 2559 aa12.18□□□□□ -0.46
Sh3rf1-201ENSMUST00000034060 Bod1lE9Q6J5 3032 aa12.18□□□□□ -0.46
Sh3rf1-201ENSMUST00000034060 2310079G19RikQ9D6L6 185 aa12.17□□□□□ -0.46
Sh3rf1-201ENSMUST00000034060 Mast4Q811L6 2618 aa12.1□□□□□ -0.47
Sh3rf1-201ENSMUST00000034060 Gm5965D3Z724 196 aa12.1□□□□□ -0.47
Sh3rf1-201ENSMUST00000034060 Chd7A2AJK6 2986 aaKnown RBP12.07□□□□□ -0.48
Sh3rf1-201ENSMUST00000034060 Jbts17Q8CE72 3214 aa12.05□□□□□ -0.48
Sh3rf1-201ENSMUST00000034060 Dmxl1Q6PNC0 3013 aa12□□□□□ -0.49
Sh3rf1-201ENSMUST00000034060 TgO08710 2766 aa11.99□□□□□ -0.49
Sh3rf1-201ENSMUST00000034060 Ash1lQ99MY8 2958 aa11.94□□□□□ -0.5
Sh3rf1-201ENSMUST00000034060 Gm2696A0A1W2P709 240 aa11.93□□□□□ -0.5
Sh3rf1-201ENSMUST00000034060 Igsf10Q3V1M1 2594 aa11.93□□□□□ -0.5
Sh3rf1-201ENSMUST00000034060 9530053A07RikE9PVG8 2581 aa11.92□□□□□ -0.5
Sh3rf1-201ENSMUST00000034060 Gm17416Q30KP4 66 aa11.9□□□□□ -0.5
Sh3rf1-201ENSMUST00000034060 Itpr1P11881 2749 aa11.87□□□□□ -0.51
Sh3rf1-201ENSMUST00000034060 Gm17402F6Z0L5 76 aa11.87□□□□□ -0.51
Sh3rf1-201ENSMUST00000034060 MgaA2AWL7 3003 aaKnown RBP11.82□□□□□ -0.52
Sh3rf1-201ENSMUST00000034060 Ubr5Q80TP3 2792 aa11.82□□□□□ -0.52
Sh3rf1-201ENSMUST00000034060 Fbn2Q61555 2907 aa11.8□□□□□ -0.52
Sh3rf1-201ENSMUST00000034060 Prm2P07978 107 aa11.79□□□□□ -0.52
Sh3rf1-201ENSMUST00000034060 UtrnE9Q6R7 3430 aa11.77□□□□□ -0.52
Sh3rf1-201ENSMUST00000034060 2310057N15RikQ9D6T8 200 aa11.76□□□□□ -0.53
Sh3rf1-201ENSMUST00000034060 Col12a1Q60847 3120 aa11.69□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 Srrm2Q8BTI8 2703 aaKnown RBP11.68□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 Nbeal2Q6ZQA0 2742 aa11.67□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 FcgbpE9Q0B5 2583 aa11.67□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 TrioQ0KL02 3102 aa11.66□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 Ranbp2Q9ERU9 3053 aaKnown RBP11.65□□□□□ -0.54
Sh3rf1-201ENSMUST00000034060 2210017I01RikA0A0A6YVV1 95 aa11.64□□□□□ -0.55
Sh3rf1-201ENSMUST00000034060 ApcQ61315 2845 aa11.64□□□□□ -0.55
Sh3rf1-201ENSMUST00000034060 Pkd1l1Q8R526 2615 aa11.62□□□□□ -0.55
Sh3rf1-201ENSMUST00000034060 Itpr2Q9Z329 2701 aa11.6□□□□□ -0.55
Sh3rf1-201ENSMUST00000034060 Col6a5A6H584 2640 aa11.58□□□□□ -0.56
Sh3rf1-201ENSMUST00000034060 Myo15bI7HPW8 3033 aa11.57□□□□□ -0.56
Sh3rf1-201ENSMUST00000034060 Lama2Q60675 3118 aaKnown RBP11.55□□□□□ -0.56
Sh3rf1-201ENSMUST00000034060 Rev3lQ61493 3122 aa11.54□□□□□ -0.56
Sh3rf1-201ENSMUST00000034060 Mki67E9PVX6 3177 aaKnown RBP11.5□□□□□ -0.57
Sh3rf1-201ENSMUST00000034060 Muc2Q80Z19 2680 aa11.49□□□□□ -0.57
Sh3rf1-201ENSMUST00000034060 KalrnA2CG49 2964 aa11.47□□□□□ -0.57
Sh3rf1-201ENSMUST00000034060 Cfap54Q8C6S9 3106 aa11.43□□□□□ -0.58
Sh3rf1-201ENSMUST00000034060 HttP42859 3119 aa11.43□□□□□ -0.58
Sh3rf1-201ENSMUST00000034060 Tex15F8VPN2 2785 aa11.42□□□□□ -0.58
Sh3rf1-201ENSMUST00000034060 Utp20Q5XG71 2788 aaKnown RBP11.41□□□□□ -0.58
Sh3rf1-201ENSMUST00000034060 Hivep1Q03172 2688 aa11.35□□□□□ -0.59
Sh3rf1-201ENSMUST00000034060 Lama3Q61789 3330 aa11.32□□□□□ -0.6
Sh3rf1-201ENSMUST00000034060 Celsr1O35161 3034 aa11.26□□□□□ -0.61
Sh3rf1-201ENSMUST00000034060 4933428G20RikQ9D3X4 101 aa11.18□□□□□ -0.62
Retrieved 100 of 22,080 RNA–protein pairs in 36.4 ms