RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Ighv2-2A0A075B5P8 116 aa7.88□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Ighv2-5A0A0A6YY69 116 aa7.88□□□□□ -1.15
Pcif1-201ENSMUST00000041643 P01821 116 aa7.88□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Igkv3-7A0A0G2JE31 119 aa7.87□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Apoc4Q61268 124 aa7.87□□□□□ -1.15
Pcif1-201ENSMUST00000041643 MgaA2AWL7 3003 aaKnown RBP7.87□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Igkv8-27A0A0G2JF28 120 aa7.86□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Reg3aO09037 175 aa7.86□□□□□ -1.15
Pcif1-201ENSMUST00000041643 AI606181Q8C7B9 129 aa7.86□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Nbeal1E9PYP2 2688 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Phxr5P08399 672 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Defb38Q7TNV7 63 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Sec61gP60060 68 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Gm28539A0A087WSL9 92 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 RetnlbQ99P86 105 aa7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 FlnaQ8BTM8 2647 aaKnown RBP7.85□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Gm5617Q91VN2 117 aa7.84□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Cdip1Q9DB75 208 aa7.84□□□□□ -1.15
Pcif1-201ENSMUST00000041643 C530025M09RikF6RGA8 229 aa7.84□□□□□ -1.15
Pcif1-201ENSMUST00000041643 Frem2Q6NVD0 3160 aa7.83□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm27235Q3UW50 83 aa7.83□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm10770F7D043 238 aa7.82□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Igkv8-19A0A0G2JFN8 121 aa7.82□□□□□ -1.16
Pcif1-201ENSMUST00000041643 H2al1aQ5M8Q2 105 aa7.82□□□□□ -1.16
Pcif1-201ENSMUST00000041643 H2al1eQ810S6 105 aa7.82□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Itpr1P11881 2749 aa7.82□□□□□ -1.16
Pcif1-201ENSMUST00000041643 OxtP35454 125 aa7.81□□□□□ -1.16
Pcif1-201ENSMUST00000041643 H2al1bA0A087WP11 105 aa7.81□□□□□ -1.16
Pcif1-201ENSMUST00000041643 AY074887Q8R5F9 132 aa7.81□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Eif4ebp3Q80VV3 101 aa7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm36176A0A1W2P8D5 158 aa7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Ranbp2Q9ERU9 3053 aaKnown RBP7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm44790A0A0N4SV91 103 aa7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Plac8Q9JI48 112 aa7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm21886J3QJU9 214 aa7.8□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Usp24B1AY13 2617 aaKnown RBP7.79□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Dmxl1Q6PNC0 3013 aa7.79□□□□□ -1.16
Pcif1-201ENSMUST00000041643 KalrnA2CG49 2964 aa7.79□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gpr15lA0A0B4J1N3 78 aa7.79□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Myo18bE9PV66 2605 aa7.78□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Gm10570F6VB42 170 aa7.78□□□□□ -1.16
Pcif1-201ENSMUST00000041643 Fbn2Q61555 2907 aa7.77□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Gm11213A0A1B0GR83 88 aa7.77□□□□□ -1.17
Pcif1-201ENSMUST00000041643 CicQ924A2 2510 aa7.76□□□□□ -1.17
Pcif1-201ENSMUST00000041643 9230102O04RikA2ASX7 82 aa7.76□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Spaca4Q80ZQ0 127 aa7.76□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Q8BT88 171 aa7.75□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Defb9Q8R2I6 67 aa7.74□□□□□ -1.17
Pcif1-201ENSMUST00000041643 PtprqP0C5E4 2300 aa7.74□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Rpl37aP61514 92 aa7.74□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Vpreb1P13372 142 aa7.74□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Dmbt1Q60997 2085 aa7.74□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Gcn1E9PVA8 2671 aaKnown RBP7.72□□□□□ -1.17
Pcif1-201ENSMUST00000041643 CnbpP53996 178 aaKnown RBP7.72□□□□□ -1.17
Pcif1-201ENSMUST00000041643 FlnbQ80X90 2602 aaKnown RBP7.71□□□□□ -1.17
Pcif1-201ENSMUST00000041643 Ndufb1P0DN34 57 aa7.71□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Wdfy3Q6VNB8 3508 aa7.7□□□□□ -1.18
Pcif1-201ENSMUST00000041643 4930518I15RikQ3V2W7 57 aa7.69□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Brca2P97929 3329 aa7.69□□□□□ -1.18
Pcif1-201ENSMUST00000041643 AtmQ62388 3066 aa7.69□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Gm17349F7BGH6 99 aa7.69□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Gm7276Q3TYW4 209 aa7.69□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Gm19935A0A1B0GSF9 52 aa7.68□□□□□ -1.18
Pcif1-201ENSMUST00000041643 FrylF8VQ05 3007 aa7.68□□□□□ -1.18
Pcif1-201ENSMUST00000041643 A930002H24RikQ8C8Y3 163 aa7.68□□□□□ -1.18
Pcif1-201ENSMUST00000041643 AspmQ8CJ27 3122 aa7.68□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Map1aQ9QYR6 2776 aa7.67□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Gm10308Q9CVR5 141 aa7.67□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Lrrc37aB1AWG4 3215 aa7.66□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Celsr3Q91ZI0 3301 aa7.66□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Gm17689B3GLJ4 109 aa7.66□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Lama1P19137 3084 aa7.65□□□□□ -1.18
Pcif1-201ENSMUST00000041643 A330070K13RikQ8CA53 115 aa7.65□□□□□ -1.18
Pcif1-201ENSMUST00000041643 Itpr3P70227 2670 aa7.65□□□□□ -1.18
Pcif1-201ENSMUST00000041643 AtrQ9JKK8 2635 aa7.65□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Zcchc13Q9D548 170 aa7.63□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Serp1Q9Z1W5 66 aa7.63□□□□□ -1.19
Pcif1-201ENSMUST00000041643 SnurfQ9WU12 71 aa7.63□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Coa6Q8BGD8 79 aa7.62□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Ndufs5Q99LY9 106 aa7.62□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Sox16Q62247 57 aa7.62□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Usp9yF8VPU6 2556 aa7.62□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Fam104aA2A6P4 185 aa7.61□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Prrc2cQ3TLH4 2846 aaKnown RBP7.61□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Anapc11Q9CPX9 84 aa7.61□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Wdfy4E9Q2M9 3149 aa7.6□□□□□ -1.19
Pcif1-201ENSMUST00000041643 Smim29Q8R043 75 aa7.59□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Gm10999F6Q4M4 69 aa7.58□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Gm10160F6Y577 67 aa7.58□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Mast4Q811L6 2618 aa7.58□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Nsd1O88491 2588 aaKnown RBP7.55□□□□□ -1.2
Pcif1-201ENSMUST00000041643 DmdP11531 3678 aa7.54□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Ash1lQ99MY8 2958 aa7.54□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Bean1Q9EQG5 255 aa7.54□□□□□ -1.2
Pcif1-201ENSMUST00000041643 PolqQ8CGS6 2544 aa7.53□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Col6a3E9PWQ3 3284 aa7.53□□□□□ -1.2
Pcif1-201ENSMUST00000041643 Gm10065F6TJM2 114 aa7.52□□□□□ -1.21
Pcif1-201ENSMUST00000041643 Gm9508A0A1W2P7W0 230 aa7.52□□□□□ -1.21
Pcif1-201ENSMUST00000041643 NbdyA0A0N4SUI7 68 aa7.51□□□□□ -1.21
Pcif1-201ENSMUST00000041643 Krtap16-1A2A5X5 502 aa7.5□□□□□ -1.21
Retrieved 100 of 22,080 RNA–protein pairs in 7.3 ms