RNA–Protein interactions for RNA: ENSMUST00000002043.9

Ccdc47-201, Transcript of Coiled-coil domain-containing protein 47, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc47, Length 5,193 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-201ENSMUST00000002043 Snhg11Q4G0K9 87 aa6.19□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Gm11213A0A1B0GR83 88 aa6.19□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Sprr1bQ62267 153 aa6.18□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 MtorQ9JLN9 2549 aa6.18□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Gm10772F7AIG4 85 aa6.18□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Q8BT88 171 aa6.18□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Col27a1Q5QNQ9 1845 aa6.18□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 7530416G11RikJ3QJX6 159 aa6.17□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Gm7276Q3TYW4 209 aa6.17□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Phf5aP83870 110 aaKnown RBP6.16□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Sprr4Q8CGN8 76 aa6.16□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 Krtap24-1G3X9A2 248 aa6.15□□□□□ -1.42
Ccdc47-201ENSMUST00000002043 AY074887Q8R5F9 132 aa6.14□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Prr13Q9CQJ5 137 aa6.14□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Piezo2Q8CD54 2822 aa6.13□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Spaca4Q80ZQ0 127 aa6.13□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Epg5Q80TA9 2572 aa6.12□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Usp9yF8VPU6 2556 aa6.1□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Hcfc1Q61191 2045 aaKnown RBP6.1□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Cypt15B1AXS0 87 aa6.1□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 Col4a2P08122 1707 aa6.1□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 SetxA2AKX3 2646 aa6.09□□□□□ -1.43
Ccdc47-201ENSMUST00000002043 RetnlbQ99P86 105 aa6.07□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Gm26620Q9CY65 116 aa6.06□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 1810062G17RikG3X8Y2 129 aa6.05□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Usp34Q6ZQ93 3582 aa6.05□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 CriptO70333 101 aa6.04□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 FasnP19096 2504 aaKnown RBP6.04□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Cep192E9Q4Y4 2514 aaKnown RBP6.04□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Unc79Q0KK59 2596 aa6.04□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Ankrd11E9Q4F7 2643 aa6.04□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 CnbpP53996 178 aaKnown RBP6.03□□□□□ -1.44
Ccdc47-201ENSMUST00000002043 Myo18bE9PV66 2605 aa6.02□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Gm5617Q91VN2 117 aa6.02□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Lypd5Q9D7Z7 256 aa6.01□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Bahcc1Q3UHR0 2643 aa6.01□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Rnase13Q5GAM7 153 aa6.01□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Fam104aA2A6P4 185 aa6□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Gm21798J3QNU5 87 aa5.99□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Defb1P56386 69 aa5.98□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Krtap11-1E9Q2E9 183 aa5.98□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Zcchc13Q9D548 170 aa5.98□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Fam168bQ80XQ8 194 aa5.97□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Eif4ebp3Q80VV3 101 aa5.97□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Chtf8P0CG14 533 aa5.96□□□□□ -1.45
Ccdc47-201ENSMUST00000002043 Nbeal1E9PYP2 2688 aa5.96□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 OxtP35454 125 aa5.96□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 SrcapA0A087WQ44 3271 aa5.95□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Gm3285A0A1W2P7U0 201 aa5.95□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 A330070K13RikQ8CA53 115 aa5.95□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Fn1P11276 2477 aaKnown RBP5.94□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Abca12E9Q876 2595 aa5.93□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Gm9955Q8CEJ8 102 aa5.93□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Cypt14J3QPF7 87 aa5.93□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Defb9Q8R2I6 67 aa5.92□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 2310034C09RikQ9D746 214 aa5.92□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 C530025M09RikF6RGA8 229 aa5.91□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Phxr5P08399 672 aa5.91□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Lama2Q60675 3118 aaKnown RBP5.91□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 CicQ924A2 2510 aa5.91□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Alms1Q8K4E0 3251 aa5.9□□□□□ -1.46
Ccdc47-201ENSMUST00000002043 Ep400Q8CHI8 3072 aaKnown RBP5.89□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Gm10065F6TJM2 114 aa5.89□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Pla2g10Q9QXX3 151 aa5.87□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Gm11565A2A4M7 156 aa5.87□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Ankrd17Q99NH0 2603 aaKnown RBP5.87□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Gm42715A0A087WP63 3095 aaKnown RBP5.86□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Kmt2bO08550 2713 aa5.86□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Gm9821Q8K076 103 aa5.85□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 NbdyA0A0N4SUI7 68 aa5.84□□□□□ -1.47
Ccdc47-201ENSMUST00000002043 Lama3Q61789 3330 aa5.83□□□□□ -1.48
Ccdc47-201ENSMUST00000002043 Odf3bQ5M8M2 238 aa5.83□□□□□ -1.48
Ccdc47-201ENSMUST00000002043 Plac8Q9JI48 112 aa5.81□□□□□ -1.48
Ccdc47-201ENSMUST00000002043 FlnbQ80X90 2602 aaKnown RBP5.78□□□□□ -1.48
Ccdc47-201ENSMUST00000002043 Usp24B1AY13 2617 aaKnown RBP5.78□□□□□ -1.48
Ccdc47-201ENSMUST00000002043 6030445D17RikE9Q8F9 148 aa5.73□□□□□ -1.49
Ccdc47-201ENSMUST00000002043 Fam229bQ8CF36 80 aa5.73□□□□□ -1.49
Ccdc47-201ENSMUST00000002043 Anapc11Q9CPX9 84 aa5.73□□□□□ -1.49
Ccdc47-201ENSMUST00000002043 SmcpP15265 143 aa5.73□□□□□ -1.49
Ccdc47-201ENSMUST00000002043 Gm4491E0CX42 125 aa5.7□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Gm3880A0A1B0GSB3 72 aa5.7□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Spink7Q6IE32 76 aa5.7□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Smim29Q8R043 75 aa5.7□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Gm10139O88245 57 aa5.7□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Gm3250E9Q1M3 230 aa5.68□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Gm16253D3Z167 63 aa5.67□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 AtrQ9JKK8 2635 aa5.67□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Fam229aB2KGE5 128 aa5.65□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Gm37013Q8K491 104 aa5.65□□□□□ -1.5
Ccdc47-201ENSMUST00000002043 Dmbt1Q60997 2085 aa5.64□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Nsd1O88491 2588 aaKnown RBP5.64□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Sprr1aQ62266 144 aa5.63□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Camk2n1Q6QWF9 78 aa5.63□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Rpl37Q9D823 97 aa5.62□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 TrioQ0KL02 3102 aa5.62□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Sec61bQ9CQS8 96 aaKnown RBP5.61□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Notch1Q01705 2531 aa5.61□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Gm10320E9PW43 113 aa5.61□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Gm3646F6S692 53 aa5.6□□□□□ -1.51
Ccdc47-201ENSMUST00000002043 Romo1P60603 79 aa5.57□□□□□ -1.52
Retrieved 100 of 22,080 RNA–protein pairs in 33.4 ms